Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G811 Micromonas commoda HOM05D005986 ORTHO05D007467 8.2e-230 800.0 408 100.0
PRCOL_00005610 Prasinoderma coloniale HOM05D005986 ORTHO05D007467 2.9e-41 173.7 352 36.1
MCO06G181 Micromonas commoda HOM05D005986 ORTHO05D007467 1.9e-24 117.9 385 28.3
AagrBONN_evm.TU.Sc2ySwM_228.1585 Anthoceros agrestis HOM05D005986 ORTHO05D007467 1.3e-22 111.7 295 33.2
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 8.7e-22 109.0 319 30.4
TAR371G0853 Trochodendron aralioides HOM05D005986 ORTHO05D007467 2.5e-21 107.5 309 30.4
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 7.4e-21 105.9 308 28.6
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 7.4e-21 105.9 325 29.5
AUR62019578 Chenopodium quinoa HOM05D005986 ORTHO05D007467 9.6e-21 105.5 279 30.1
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 1.3e-20 105.1 282 30.5
EL10Ac4g08348 Beta vulgaris HOM05D005986 ORTHO05D007467 2.1e-20 104.4 286 28.0
Migut.K01148 Erythranthe guttata HOM05D005986 ORTHO05D007467 2.8e-20 104.0 348 29.3
ECA246G5024 Erigeron canadensis HOM05D005986 ORTHO05D007467 3.7e-20 103.6 301 28.2
TPR.G6140 Trifolium pratense HOM05D005986 ORTHO05D007467 4.8e-20 103.2 285 28.1
Gohir.D09G002900 Gossypium hirsutum HOM05D005986 ORTHO05D007467 8.2e-20 102.4 287 30.7
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 8.2e-20 102.4 310 28.4
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 8.2e-20 102.4 282 28.4
Cre01.g000900 Chlamydomonas reinhardtii HOM05D005986 ORTHO05D007467 1.1e-19 102.1 399 28.3
FvH4_4g21940 Fragaria vesca HOM05D005986 ORTHO05D007467 1.4e-19 101.7 354 28.2
Gohir.A09G003100 Gossypium hirsutum HOM05D005986 ORTHO05D007467 1.4e-19 101.7 286 30.1
Potri.001G072400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.4e-19 101.7 322 28.0
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 1.8e-19 101.3 323 28.8
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 2.4e-19 100.9 286 29.7
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 3.1e-19 100.5 286 29.4
Gorai.006G003600 Gossypium raimondii HOM05D005986 ORTHO05D007467 3.1e-19 100.5 345 28.4
PSO017G0169 Papaver somniferum HOM05D005986 ORTHO05D007467 3.1e-19 100.5 318 31.8
ATR0582G342 Amborella trichopoda HOM05D005986 ORTHO05D007467 4.1e-19 100.1 292 30.5
Ciclev10028467m.g Citrus clementina HOM05D005986 ORTHO05D007467 4.1e-19 100.1 328 29.3
HanXRQChr06g0175331 Helianthus annuus HOM05D005986 ORTHO05D007467 4.1e-19 100.1 284 30.6
PSO478G1012 Papaver somniferum HOM05D005986 ORTHO05D007467 4.1e-19 100.1 342 30.4
RcHm_v2.0_Chr4g0428161 Rosa chinensis HOM05D005986 ORTHO05D007467 4.1e-19 100.1 325 29.5
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 4.1e-19 100.1 282 31.6
Sc11g0000020 Simmondsia chinensis HOM05D005986 ORTHO05D007467 5.3e-19 99.8 324 28.7
CsaV3_3G043440 Cucumis sativus L. HOM05D005986 ORTHO05D007467 6.9e-19 99.4 282 30.1
SGA_v2.0_scaffold258G45750 Striga asiatica HOM05D005986 ORTHO05D007467 9.0e-19 99.0 304 28.9
TWI36G0919 Tripterygium wilfordii HOM05D005986 ORTHO05D007467 9.0e-19 99.0 319 29.5
MELO3C026759.2 Cucumis melo HOM05D005986 ORTHO05D007467 1.2e-18 98.6 282 30.5
HanXRQChr17g0540591 Helianthus annuus HOM05D005986 ORTHO05D007467 1.5e-18 98.2 342 28.9
MD13G1135500 Malus domestica HOM05D005986 ORTHO05D007467 1.5e-18 98.2 319 28.5
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.5e-18 98.2 286 29.7
unitig_747.g21105 Utricularia gibba HOM05D005986 ORTHO05D007467 1.5e-18 98.2 291 30.2
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 2.0e-18 97.8 288 29.9
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 2.0e-18 97.8 282 30.1
Haze_12546 Corylus avellana HOM05D005986 ORTHO05D007467 3.4e-18 97.1 286 29.7
Prupe.1G209800 Prunus persica HOM05D005986 ORTHO05D007467 3.4e-18 97.1 286 30.1
arahy.Tifrunner.gnm1.ann1.946FET Arachis hypogaea HOM05D005986 ORTHO05D007467 4.5e-18 96.7 286 30.1
Gorai.008G095500 Gossypium raimondii HOM05D005986 ORTHO05D007467 7.6e-18 95.9 284 29.2
Sabra03G0114800 Salix brachista HOM05D005986 ORTHO05D007467 7.6e-18 95.9 288 30.2
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 1.0e-17 95.5 282 29.8
Phvul.003G273800 Phaseolus vulgaris HOM05D005986 ORTHO05D007467 1.0e-17 95.5 286 28.3
arahy.Tifrunner.gnm1.ann1.7WS5BD Arachis hypogaea HOM05D005986 ORTHO05D007467 1.3e-17 95.1 286 29.7
BolC7t44395H Brassica oleracea HOM05D005986 ORTHO05D007467 1.3e-17 95.1 288 29.9
Gohir.A12G086500 Gossypium hirsutum HOM05D005986 ORTHO05D007467 1.3e-17 95.1 348 27.0
MD16G1131100 Malus domestica HOM05D005986 ORTHO05D007467 1.3e-17 95.1 319 29.2
GSVIVG01001142001 Vitis vinifera HOM05D005986 ORTHO05D007467 1.3e-17 95.1 286 29.0
MSTRG.8073 Avicennia marina HOM05D005986 ORTHO05D007467 1.7e-17 94.7 288 29.2
A06p39510 Brassica napus HOM05D005986 ORTHO05D007467 1.7e-17 94.7 288 29.9
BraA06t26866Z Brassica rapa HOM05D005986 ORTHO05D007467 1.7e-17 94.7 288 29.9
VMungo0251G3786 Vigna mungo HOM05D005986 ORTHO05D007467 1.7e-17 94.7 326 27.9
C07p38760 Brassica napus HOM05D005986 ORTHO05D007467 2.2e-17 94.4 288 29.9
Eucgr.B03577 Eucalyptus grandis HOM05D005986 ORTHO05D007467 3.8e-17 93.6 288 29.5
SMO145G0091 Selaginella moellendorffii HOM05D005986 ORTHO05D007467 5.0e-17 93.2 288 29.5
Oeu056144.2 Olea europaea HOM05D005986 ORTHO05D007467 6.5e-17 92.8 293 29.7
PRCOL_00002187 Prasinoderma coloniale HOM05D005986 ORTHO05D007467 1.1e-16 92.0 228 33.8
Thecc.01G233000 Theobroma cacao HOM05D005986 ORTHO05D007467 1.4e-16 91.7 381 27.8
Dinv07612 Davidia involucrata HOM05D005986 ORTHO05D007467 1.9e-16 91.3 286 29.0
Sed0002782 Sechium edule HOM05D005986 ORTHO05D007467 1.9e-16 91.3 285 29.5
Cc11_g14820 Coffea canephora HOM05D005986 ORTHO05D007467 2.5e-16 90.9 305 27.2
COL.COLO4_06172 Corchorus olitorius HOM05D005986 ORTHO05D007467 2.5e-16 90.9 282 28.4
Gohir.D12G085100 Gossypium hirsutum HOM05D005986 ORTHO05D007467 3.2e-16 90.5 330 27.3
Hma1.2p1_1356F.1_g277880 Hydrangea macrophylla HOM05D005986 ORTHO05D007467 3.2e-16 90.5 282 29.4
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 3.2e-16 90.5 310 28.1
QL03p046965 Quercus lobata HOM05D005986 ORTHO05D007467 4.2e-16 90.1 385 27.0
Actinidia33985 Actinidia chinensis HOM05D005986 ORTHO05D007467 1.6e-15 88.2 282 28.0
HPP92_001278 Vanilla planifolia HOM05D005986 ORTHO05D007467 2.7e-15 87.4 385 27.3
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 3.5e-15 87.0 274 24.5
TAR627G0548 Trochodendron aralioides HOM05D005986 ORTHO05D007467 6.1e-15 86.3 288 27.8
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 1.3e-14 85.1 274 24.1
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 2.3e-14 84.3 280 26.1
Cpa.g.sc102.15 Carica papaya HOM05D005986 ORTHO05D007467 2.3e-14 84.3 321 25.5
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 5.1e-14 83.2 298 23.8
FAN07G2431 Fragaria x ananassa HOM05D005986 ORTHO05D007467 6.7e-14 82.8 376 26.1
Glyma.08G265400 Glycine max HOM05D005986 ORTHO05D007467 6.7e-14 82.8 151 34.4
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 6.7e-14 82.8 275 23.3
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 1.1e-13 82.0 306 25.2
Cfa012833 Carpinus fangiana HOM05D005986 ORTHO05D007467 1.5e-13 81.6 151 36.4
FAN12G1445 Fragaria x ananassa HOM05D005986 ORTHO05D007467 1.5e-13 81.6 371 25.9
PRCOL_00005115 Prasinoderma coloniale HOM05D005986 ORTHO05D007819 1.5e-13 81.6 263 28.1
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 2.5e-13 80.9 280 25.4
Ah.06g185370 Amaranthus hybridus HOM05D005986 ORTHO05D007467 4.3e-13 80.1 142 35.2
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 4.3e-13 80.1 301 23.9
COL.COLO4_04222 Corchorus olitorius HOM05D005986 ORTHO05D007467 9.7e-13 79.0 311 27.3
CSS0012960 Camellia sinensis var. sinensis HOM05D005986 ORTHO05D007467 1.3e-12 78.6 143 37.1
DCAR_006993 Daucus carota HOM05D005986 ORTHO05D007467 1.6e-12 78.2 263 26.2
Lj3C1079G16 Lonicera japonica HOM05D005986 ORTHO05D007467 1.6e-12 78.2 135 39.3
vmacro15979 Vaccinium macrocarpon HOM05D005986 ORTHO05D007467 2.2e-12 77.8 339 25.7
Hund00002 Selenicereus undatus HOM05D005986 ORTHO05D007467 8.2e-12 75.9 133 36.8
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 1.8e-11 74.7 286 28.3
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 3.1e-11 73.9 255 23.1
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 3.4e-10 70.5 302 22.5
Rhsim12G0090600 Rhododendron simsii HOM05D005986 ORTHO05D007467 5.9e-10 69.7 142 35.9
Sabra01G0051000 Salix brachista HOM05D005986 ORTHO05D007467 1.7e-09 68.2 237 28.7
AUR62042784 Chenopodium quinoa HOM05D005986 ORTHO05D007467 3.8e-09 67.0 236 25.8
Os09g0436900 Oryza sativa ssp. japonica HOM05D006336 ORTHO05D007819 3.8e-09 67.0 100 38.0
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 5.0e-09 66.6 251 25.5
Hma1.2p1_1356F.1_g277890 Hydrangea macrophylla HOM05D005986 ORTHO05D007467 6.1e-07 59.7 234 27.4


User provided reference genes

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