Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G758 Micromonas commoda HOM05D007050 ORTHO05D008849 4.1e-96 354.8 182 100.0
CARHR186790 Cardamine hirsuta HOM05D007050 ORTHO05D008849 7.9e-15 84.7 119 42.9
Lj2P125T52 Lonicera japonica HOM05D007050 ORTHO05D008849 1.3e-14 84.0 108 44.4
BcaC04g21951 Brassica carinata HOM05D007050 ORTHO05D008849 2.3e-14 83.2 134 41.8
Mapoly0142s0029 Marchantia polymorpha HOM05D007050 ORTHO05D008849 3.0e-14 82.8 119 41.2
AL8G17700 Arabidopsis lyrata HOM05D007050 ORTHO05D008849 3.9e-14 82.4 110 41.8
AT5G43050 Arabidopsis thaliana HOM05D007050 ORTHO05D008849 3.9e-14 82.4 110 41.8
Carub.0008s0571 Capsella rubella HOM05D007050 ORTHO05D008849 3.9e-14 82.4 110 41.8
Thhalv10003284m.g Eutrema salsugineum HOM05D007050 ORTHO05D008849 3.9e-14 82.4 110 43.6
Os04g0488600 Oryza sativa ssp. japonica HOM05D007050 ORTHO05D008849 5.1e-14 82.0 115 43.5
Potri.012G134700 Populus trichocarpa HOM05D007050 ORTHO05D008849 5.1e-14 82.0 122 44.3
C09p25560 Brassica napus HOM05D007050 ORTHO05D008849 8.7e-14 81.3 110 43.6
BolC9t55456H Brassica oleracea HOM05D007050 ORTHO05D008849 8.7e-14 81.3 110 43.6
BraA09t37628Z Brassica rapa HOM05D007050 ORTHO05D008849 8.7e-14 81.3 110 43.6
Aa31LG9G13150 Aethionema arabicum HOM05D007050 ORTHO05D008849 1.1e-13 80.9 110 44.5
BcaB07g31026 Brassica carinata HOM05D007050 ORTHO05D008849 1.1e-13 80.9 135 40.0
A09p20160 Brassica napus HOM05D007050 ORTHO05D008849 1.1e-13 80.9 134 41.0
Sp2g07800 Schrenkiella parvula HOM05D007050 ORTHO05D008849 1.1e-13 80.9 129 41.1
Dinv01994 Davidia involucrata HOM05D007050 ORTHO05D008849 1.5e-13 80.5 110 43.6
Dinv21998 Davidia involucrata HOM05D007050 ORTHO05D008849 1.5e-13 80.5 110 43.6
Dinv30101 Davidia involucrata HOM05D007050 ORTHO05D008849 1.5e-13 80.5 110 43.6
Migut.F01153 Erythranthe guttata HOM05D007050 ORTHO05D008849 3.3e-13 79.3 110 44.5
AUR62016042 Chenopodium quinoa HOM05D007050 ORTHO05D008849 5.6e-13 78.6 110 41.8
THA.LOC104820496 Tarenaya hassleriana HOM05D007050 ORTHO05D008849 5.6e-13 78.6 110 43.6
DCAR_020794 Daucus carota HOM05D007050 ORTHO05D008849 7.4e-13 78.2 110 41.8
Sabra12G0101300 Salix brachista HOM05D007050 ORTHO05D008849 7.4e-13 78.2 110 44.5
Sed0026780 Sechium edule HOM05D007050 ORTHO05D008849 7.4e-13 78.2 110 42.7
Hund18113 Selenicereus undatus HOM05D007050 ORTHO05D008849 7.4e-13 78.2 118 42.4
TAR375G0109 Trochodendron aralioides HOM05D007050 ORTHO05D008849 7.4e-13 78.2 122 41.8
GSVIVG01010640001 Vitis vinifera HOM05D007050 ORTHO05D008849 7.4e-13 78.2 110 42.7
ClCG01G005370 Citrullus lanatus HOM05D007050 ORTHO05D008849 9.6e-13 77.8 110 42.7
CsaV3_5G005620 Cucumis sativus L. HOM05D007050 ORTHO05D008849 9.6e-13 77.8 110 42.7
FvH4_2g06230 Fragaria vesca HOM05D007050 ORTHO05D008849 9.6e-13 77.8 121 41.3
Glyma.18G070900 Glycine max HOM05D007050 ORTHO05D008849 9.6e-13 77.8 139 38.1
CDE03G0478 Ceratophyllum demersum HOM05D007050 ORTHO05D008849 1.3e-12 77.4 105 41.9
Peaxi162Scf00302g00002 Petunia axillaris HOM05D007050 ORTHO05D008849 1.3e-12 77.4 109 42.2
Phvul.006G062300 Phaseolus vulgaris HOM05D007050 ORTHO05D008849 1.3e-12 77.4 139 38.1
SGA_v2.0_scaffold10G05396 Striga asiatica HOM05D007050 ORTHO05D008849 1.3e-12 77.4 105 42.9
Ciclev10006100m.g Citrus clementina HOM05D007050 ORTHO05D008849 1.6e-12 77.0 148 37.8
COL.COLO4_14249 Corchorus olitorius HOM05D007050 ORTHO05D008849 1.6e-12 77.0 133 39.8
Gohir.A12G261300 Gossypium hirsutum HOM05D007050 ORTHO05D008849 1.6e-12 77.0 110 42.7
MBI04_g03341_MAGBIO Magnolia biondii HOM05D007050 ORTHO05D008849 1.6e-12 77.0 122 41.8
MD05G1079400 Malus domestica HOM05D007050 ORTHO05D008849 1.6e-12 77.0 120 40.8
RcHm_v2.0_Chr6g0256951 Rosa chinensis HOM05D007050 ORTHO05D008849 1.6e-12 77.0 105 41.9
TPR.G14735 Trifolium pratense HOM05D007050 ORTHO05D008849 1.6e-12 77.0 107 41.1
AagrBONN_evm.TU.Sc2ySwM_344.2682 Anthoceros agrestis HOM05D007050 ORTHO05D008849 2.1e-12 76.6 136 37.5
Aqoxy7G00473 Aquilegia oxysepala HOM05D007050 ORTHO05D008849 2.1e-12 76.6 120 40.8
Gorai.008G281000 Gossypium raimondii HOM05D007050 ORTHO05D008849 2.1e-12 76.6 122 41.8
Nitab4.5_0002395g0040 Nicotiana tabacum HOM05D007050 ORTHO05D008849 2.1e-12 76.6 110 41.8
Nitab4.5_0005171g0060 Nicotiana tabacum HOM05D007050 ORTHO05D008849 2.1e-12 76.6 110 41.8
Nitab4.5_0007465g0080 Nicotiana tabacum HOM05D007050 ORTHO05D008849 2.1e-12 76.6 110 41.8
Rhsim09G0195800 Rhododendron simsii HOM05D007050 ORTHO05D008849 2.1e-12 76.6 130 38.5
CiPaw.04G068600 Carya illinoinensis HOM05D007050 ORTHO05D008849 2.8e-12 76.3 110 41.8
Cc02_g03480 Coffea canephora HOM05D007050 ORTHO05D008849 2.8e-12 76.3 110 41.8
Lj1P158T25 Lonicera japonica HOM05D007050 ORTHO05D008849 2.8e-12 76.3 110 41.8
Lj6g0001476 Lotus japonicus HOM05D007050 ORTHO05D008849 2.8e-12 76.3 110 41.8
Lalb_Chr18g0050481 Lupinus albus HOM05D007050 ORTHO05D008849 2.8e-12 76.3 110 41.8
Sopen02g021430 Solanum pennellii HOM05D007050 ORTHO05D008849 2.8e-12 76.3 110 41.8
VMungo0540G0839 Vigna mungo HOM05D007050 ORTHO05D008849 2.8e-12 76.3 139 38.1
Zm00001eb078970 Zea mays HOM05D007050 ORTHO05D008849 2.8e-12 76.3 115 41.7
PSO832G4279 Papaver somniferum HOM05D007050 ORTHO05D008849 3.6e-12 75.9 110 41.8
PGSC0003DMG400028475 Solanum tuberosum HOM05D007050 ORTHO05D008849 3.6e-12 75.9 110 41.8
unitig_0.g465 Utricularia gibba HOM05D007050 ORTHO05D008849 3.6e-12 75.9 105 41.0
ATR0712G080 Amborella trichopoda HOM05D007050 ORTHO05D008849 4.8e-12 75.5 105 41.9
Sed0027301 Sechium edule HOM05D007050 ORTHO05D008849 4.8e-12 75.5 110 42.7
SEGI_25801 Sequoiadendron giganteum HOM05D007050 ORTHO05D008849 4.8e-12 75.5 115 40.9
Thecc.03G169300 Theobroma cacao HOM05D007050 ORTHO05D008849 4.8e-12 75.5 105 41.9
CAN.G411.83 Capsicum annuum HOM05D007050 ORTHO05D008849 6.2e-12 75.1 110 41.8
Nitab4.5_0002684g0010 Nicotiana tabacum HOM05D007050 ORTHO05D008849 6.2e-12 75.1 110 41.8
Prupe.8G123300 Prunus persica HOM05D007050 ORTHO05D008849 6.2e-12 75.1 105 41.0
Sc19g0001730 Simmondsia chinensis HOM05D007050 ORTHO05D008849 6.2e-12 75.1 105 40.0
TWI14G0742 Tripterygium wilfordii HOM05D007050 ORTHO05D008849 6.2e-12 75.1 115 40.0
FAN15G0493 Fragaria x ananassa HOM05D007050 ORTHO05D008849 8.1e-12 74.7 118 40.7
arahy.Tifrunner.gnm1.ann1.78X7SL Arachis hypogaea HOM05D007050 ORTHO05D008849 1.1e-11 74.3 135 37.0
arahy.Tifrunner.gnm1.ann1.PW8R36 Arachis hypogaea HOM05D007050 ORTHO05D008849 1.1e-11 74.3 135 37.0
CANSAT25G0493 Cannabis sativa HOM05D007050 ORTHO05D008849 1.1e-11 74.3 122 38.5
vmacro09864 Vaccinium macrocarpon HOM05D007050 ORTHO05D008849 1.1e-11 74.3 119 39.5
CSS0007014 Camellia sinensis var. sinensis HOM05D007050 ORTHO05D008849 1.4e-11 73.9 108 38.9
CSS0039992 Camellia sinensis var. sinensis HOM05D007050 ORTHO05D008849 1.4e-11 73.9 108 38.9
Haze_13774 Corylus avellana HOM05D007050 ORTHO05D008849 1.4e-11 73.9 122 39.3
Medtr3g061530 Medicago truncatula HOM05D007050 ORTHO05D008849 1.4e-11 73.9 105 41.0
Psat5g164520 Pisum sativum HOM05D007050 ORTHO05D008849 1.4e-11 73.9 107 39.3
Ca_14876_v3 Cicer arietinum L. HOM05D007050 ORTHO05D008849 1.8e-11 73.6 145 35.9
Duzib084G1442 Durio zibethinus HOM05D007050 ORTHO05D008849 2.4e-11 73.2 155 36.1
SMO352G0024 Selaginella moellendorffii HOM05D007050 ORTHO05D008849 2.4e-11 73.2 104 38.5
ECA248G3280 Erigeron canadensis HOM05D007050 ORTHO05D008849 4.0e-11 72.4 105 40.0
Hma1.2p1_0270F.1_g108570 Hydrangea macrophylla HOM05D007050 ORTHO05D008849 5.3e-11 72.0 121 38.8
PGR031G0901 Punica granatum HOM05D007050 ORTHO05D008849 5.3e-11 72.0 156 32.7
Eucgr.A02837 Eucalyptus grandis HOM05D007050 ORTHO05D008849 9.0e-11 71.2 122 37.7
Lsat_1_v5_gn_1_51040 Lactuca sativa HOM05D007050 ORTHO05D008849 9.0e-11 71.2 102 41.2
Atru.BG.173.p Acer truncatum HOM05D007050 ORTHO05D008849 1.2e-10 70.9 111 44.1
HanXRQChr11g0350791 Helianthus annuus HOM05D007050 ORTHO05D008849 1.2e-10 70.9 105 40.0
CSS0050457 Camellia sinensis var. sinensis HOM05D007050 ORTHO05D008849 2.6e-10 69.7 108 37.0
Pp3c18_12660 Physcomitrium patens HOM05D007050 ORTHO05D008849 4.5e-10 68.9 132 35.6
Nitab4.5_0007465g0070 Nicotiana tabacum HOM05D007050 ORTHO05D008849 7.6e-10 68.2 106 38.7
BolC6t38996H Brassica oleracea HOM05D002921 ORTHO05D003258 1.9e-08 63.5 132 36.4
C06p39040 Brassica napus HOM05D002921 ORTHO05D003258 1.2e-07 60.8 136 33.1
Thhalv10019157m.g Eutrema salsugineum HOM05D002921 ORTHO05D003258 1.2e-07 60.8 127 35.4
MELO3C005391.2 Cucumis melo HOM05D007050 ORTHO05D008849 1.6e-07 60.5 82 41.5
Lsat_1_v5_gn_6_23480 Lactuca sativa HOM05D002921 ORTHO05D003258 1.6e-07 60.5 115 34.8
SMO353G0424 Selaginella moellendorffii HOM05D002921 ORTHO05D003258 2.1e-07 60.1 110 39.1
Sp5g20150 Schrenkiella parvula HOM05D002921 ORTHO05D003258 2.7e-07 59.7 127 33.1
BcaB05g24112 Brassica carinata HOM05D002921 ORTHO05D003258 3.5e-07 59.3 118 35.6
Ah.13g067900 Amaranthus hybridus HOM05D007050 ORTHO05D008849 6.0e-07 58.5 81 40.7
EL10Ac3g05723 Beta vulgaris HOM05D007050 ORTHO05D008849 6.0e-07 58.5 80 40.0
FvH4_6g00150 Fragaria vesca HOM05D002921 ORTHO05D003258 6.0e-07 58.5 118 36.4
FAN09G4795 Fragaria x ananassa HOM05D002921 ORTHO05D003258 6.0e-07 58.5 118 36.4
Gohir.D12G262200 Gossypium hirsutum HOM05D007050 ORTHO05D008849 6.0e-07 58.5 91 41.8
Nn6g34283 Nelumbo nucifera HOM05D007050 ORTHO05D008849 6.0e-07 58.5 79 41.8
CARHR057080 Cardamine hirsuta HOM05D002921 ORTHO05D003258 7.9e-07 58.2 128 35.2
Manes.12G002200 Manihot esculenta HOM05D002921 ORTHO05D003258 7.9e-07 58.2 130 34.6
AUR62021248 Chenopodium quinoa HOM05D007050 ORTHO05D008849 1.0e-06 57.8 80 40.0
Ciclev10012826m.g Citrus clementina HOM05D002921 ORTHO05D003258 1.0e-06 57.8 111 36.0
Phvul.002G212700 Phaseolus vulgaris HOM05D002921 ORTHO05D003258 1.0e-06 57.8 112 37.5
FAN02G1717 Fragaria x ananassa HOM05D002921 ORTHO05D003258 1.3e-06 57.4 114 36.8
Manes.06G142700 Manihot esculenta HOM05D007050 ORTHO05D008849 1.3e-06 57.4 79 41.8
Os09g0287500 Oryza sativa ssp. japonica HOM05D002921 ORTHO05D003258 1.3e-06 57.4 112 33.9
RcHm_v2.0_Chr3g0447501 Rosa chinensis HOM05D002921 ORTHO05D003258 1.3e-06 57.4 114 36.8
SMO171G0068 Selaginella moellendorffii HOM05D002921 ORTHO05D003258 1.3e-06 57.4 110 37.3
VMungo0251G0018 Vigna mungo HOM05D002921 ORTHO05D003258 1.3e-06 57.4 112 37.5
AT1G65420 Arabidopsis thaliana HOM05D002921 ORTHO05D003258 1.8e-06 57.0 119 35.3
AL2G22090 Arabidopsis lyrata HOM05D002921 ORTHO05D003258 2.3e-06 56.6 130 33.8
EL10Ac3g05676 Beta vulgaris HOM05D007050 ORTHO05D008849 2.3e-06 56.6 114 36.0
TPR.G2829 Trifolium pratense HOM05D002921 ORTHO05D003258 2.3e-06 56.6 113 38.1
Atru.chr1.541 Acer truncatum HOM05D007050 ORTHO05D008849 3.0e-06 56.2 101 37.6
Glyma.07G181800 Glycine max HOM05D002921 ORTHO05D003258 3.9e-06 55.8 112 35.7
arahy.Tifrunner.gnm1.ann1.M2KELG Arachis hypogaea HOM05D002921 ORTHO05D003258 5.1e-06 55.5 112 35.7
arahy.Tifrunner.gnm1.ann1.USH98G Arachis hypogaea HOM05D002921 ORTHO05D003258 5.1e-06 55.5 112 35.7
BcaC03g14703 Brassica carinata HOM05D002921 ORTHO05D003258 5.1e-06 55.5 121 33.9
Actinidia32907 Actinidia chinensis HOM05D007050 ORTHO05D008849 6.7e-06 55.1 79 39.2
Ca_18381_v3 Cicer arietinum L. HOM05D002921 ORTHO05D003258 6.7e-06 55.1 112 36.6
A02p13200 Brassica napus HOM05D002921 ORTHO05D003258 8.7e-06 54.7 122 33.6
CANSAT54G0399 Cannabis sativa HOM05D002921 ORTHO05D003258 8.7e-06 54.7 112 34.8
Glyma.08G068000 Glycine max HOM05D002921 ORTHO05D003258 8.7e-06 54.7 112 34.8
Lj4g0016274 Lotus japonicus HOM05D002921 ORTHO05D003258 8.7e-06 54.7 113 36.3
PSO063G1762 Papaver somniferum HOM05D002921 ORTHO05D003258 8.7e-06 54.7 113 33.6


User provided reference genes

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