Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 4.0e-195 684.5 327 100.0
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.9e-93 344.4 350 49.1
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 5.6e-88 328.6 326 46.3
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.5e-61 240.7 361 39.1
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.9e-57 226.1 320 36.2
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.4e-54 217.6 333 35.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.0e-52 211.5 326 35.3
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 7.2e-51 205.3 315 34.6
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.6e-50 204.1 293 35.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 7.4e-48 195.3 285 35.4
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 7.4e-48 195.3 297 33.7
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.1e-42 177.2 342 31.9
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.6e-37 160.2 333 29.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.3e-36 157.9 347 28.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 2.9e-36 156.8 303 29.4
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 6.5e-36 155.6 320 30.3
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.5e-35 153.7 304 30.6
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.2e-35 153.3 307 29.3
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.0e-33 146.4 342 28.7
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.0e-33 146.4 351 30.2
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 8.8e-33 145.2 296 31.1
Cre01.g050451 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.0e-32 144.1 399 27.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.7e-31 139.8 367 26.4
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 5.0e-28 129.4 335 25.4
CBR_g12467 Chara braunii HOM05D008676 ORTHO05D010936 1.2e-26 124.8 306 30.4
PRCOL_00003912 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.1e-26 122.5 364 26.4
MCO15G046 Micromonas commoda HOM05D008676 ORTHO05D010936 5.7e-24 115.9 171 35.7
PRCOL_00002565 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.8e-23 112.8 261 30.3
PRCOL_00000498 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.2e-20 104.0 315 26.3
AagrBONN_evm.TU.Sc2ySwM_368.1640 Anthoceros agrestis HOM05D066407 ORTHO05D010936 5.0e-20 102.8 147 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1638 Anthoceros agrestis HOM05D066407 ORTHO05D010936 4.2e-19 99.8 145 33.1
Cre13.g591700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.2e-19 99.0 314 26.8
MCO15G671 Micromonas commoda HOM05D008676 ORTHO05D010936 8.0e-18 95.5 338 26.0
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.0e-17 93.2 219 27.9
Cre12.g547700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.8e-16 88.6 202 30.2
PRCOL_00006674 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.8e-14 84.3 197 28.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 2.9e-12 77.0 302 26.2
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 5.0e-12 76.3 320 25.6
MCO13G127 Micromonas commoda HOM05D008676 ORTHO05D048976 6.6e-12 75.9 215 27.0
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 8.6e-12 75.5 309 28.2
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 8.6e-12 75.5 303 26.1
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 8.6e-12 75.5 304 28.6
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-11 75.1 304 28.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-11 75.1 304 28.3
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 1.1e-11 75.1 304 26.6
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.9e-11 74.3 304 28.0
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 2.5e-11 73.9 303 26.7
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 3.3e-11 73.6 80 40.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 3.3e-11 73.6 314 28.0
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 4.2e-11 73.2 307 24.8
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 7.2e-11 72.4 307 24.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 9.5e-11 72.0 304 28.0
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.2e-10 71.6 304 27.3
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 1.6e-10 71.2 307 25.4
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 1.6e-10 71.2 304 27.0
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.1e-10 70.9 303 25.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 2.1e-10 70.9 318 26.1
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 2.1e-10 70.9 305 28.2
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 2.1e-10 70.9 305 26.6
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 2.8e-10 70.5 310 27.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 3.6e-10 70.1 315 27.3
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 3.6e-10 70.1 301 28.2
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 3.6e-10 70.1 301 26.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 4.7e-10 69.7 306 27.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 4.7e-10 69.7 303 25.1
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 6.1e-10 69.3 303 26.1
CBR_g24179 Chara braunii HOM05D008676 ORTHO05D010936 6.1e-10 69.3 145 31.0
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 6.1e-10 69.3 311 25.1
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 6.1e-10 69.3 306 27.8
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 6.1e-10 69.3 302 26.2
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 6.1e-10 69.3 304 27.0
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 6.1e-10 69.3 299 26.4
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 8.0e-10 68.9 302 24.8
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 8.0e-10 68.9 302 26.8
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 8.0e-10 68.9 323 26.3
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 8.0e-10 68.9 303 25.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.0e-09 68.6 305 27.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.0e-09 68.6 290 23.4
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 1.4e-09 68.2 305 24.9
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 1.4e-09 68.2 305 24.9
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 1.4e-09 68.2 305 24.9
CBR_g50631 Chara braunii HOM05D008676 ORTHO05D010936 1.4e-09 68.2 138 29.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 1.4e-09 68.2 303 28.1
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.4e-09 68.2 301 26.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 1.4e-09 68.2 302 25.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 1.8e-09 67.8 312 26.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 1.8e-09 67.8 311 24.8
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 1.8e-09 67.8 306 25.8
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 2.3e-09 67.4 301 23.3
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 2.3e-09 67.4 302 24.5
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 3.0e-09 67.0 299 26.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 3.0e-09 67.0 303 27.1
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 4.0e-09 66.6 306 24.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 4.0e-09 66.6 306 24.8
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 4.0e-09 66.6 305 24.6
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 5.2e-09 66.2 309 27.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 5.2e-09 66.2 311 24.4
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 6.8e-09 65.9 306 26.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 8.9e-09 65.5 303 24.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 8.9e-09 65.5 294 25.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 8.9e-09 65.5 310 24.2
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 8.9e-09 65.5 291 24.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 1.2e-08 65.1 309 24.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 1.2e-08 65.1 304 26.6
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.5e-08 64.7 311 26.0
Cre09.g394769 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.5e-08 64.7 265 20.8
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.0e-08 64.3 306 24.5
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 2.0e-08 64.3 300 25.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 2.0e-08 64.3 301 25.9
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 2.0e-08 64.3 302 24.8
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 2.0e-08 64.3 303 25.1
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 2.6e-08 63.9 306 26.5
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 2.6e-08 63.9 305 23.6
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 2.6e-08 63.9 290 24.1
CBR_g36369 Chara braunii HOM05D008676 ORTHO05D010936 3.4e-08 63.5 58 44.8
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 3.4e-08 63.5 290 23.8
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 4.4e-08 63.2 309 26.5
PRCOL_00006851 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.4e-08 63.2 143 29.4
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 5.7e-08 62.8 304 24.7
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 7.5e-08 62.4 301 24.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 7.5e-08 62.4 304 25.3
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 9.8e-08 62.0 301 24.9
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 9.8e-08 62.0 303 26.1
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 1.3e-07 61.6 302 24.5
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 1.3e-07 61.6 299 27.4
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 1.3e-07 61.6 305 26.2
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.7e-07 61.2 187 29.4
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 1.7e-07 61.2 304 25.7
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.7e-07 61.2 305 24.6
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.7e-07 61.2 223 27.4
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 2.9e-07 60.5 306 24.8
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 2.9e-07 60.5 305 25.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 3.7e-07 60.1 310 25.5
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 4.9e-07 59.7 305 25.9
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 4.9e-07 59.7 303 24.8
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 8.3e-07 58.9 203 29.6
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 1.1e-06 58.5 303 23.1
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 3.2e-06 57.0 186 29.6
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 5.4e-06 56.2 300 24.3
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-06 55.8 105 32.4


User provided reference genes

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