Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 3.4e-228 794.7 398 100.0
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.4e-133 480.3 396 59.6
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 2.9e-131 472.6 380 62.4
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 1.8e-128 463.4 388 59.8
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 2.6e-127 459.5 358 60.6
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.3e-126 457.2 385 60.3
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 8.3e-126 454.5 382 57.6
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 5.7e-119 431.8 359 58.5
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 9.8e-119 431.0 381 56.4
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 2.2e-118 429.9 383 56.9
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.7e-118 429.1 360 58.3
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.7e-118 429.1 362 56.6
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 2.4e-117 426.4 360 57.2
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 3.1e-117 426.0 362 57.2
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 4.1e-117 425.6 362 57.2
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 4.1e-117 425.6 359 57.7
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 5.4e-117 425.2 374 56.7
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 5.4e-117 425.2 374 56.7
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 5.4e-117 425.2 381 55.4
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 9.1e-117 424.5 362 58.3
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.2e-116 424.1 371 55.5
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 1.2e-116 424.1 382 55.0
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.6e-116 423.7 388 54.1
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.6e-116 423.7 362 58.3
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 2.0e-116 423.3 362 58.0
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.5e-116 422.5 386 54.4
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.5e-116 422.5 360 56.4
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 3.5e-116 422.5 383 55.6
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 3.5e-116 422.5 388 54.4
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 3.5e-116 422.5 382 54.7
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 3.5e-116 422.5 362 57.2
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 4.5e-116 422.2 362 57.7
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 5.9e-116 421.8 360 56.7
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 7.7e-116 421.4 391 54.5
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 1.0e-115 421.0 361 56.2
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.0e-115 421.0 362 56.9
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.3e-115 420.6 360 57.2
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.3e-115 420.6 351 58.1
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 1.3e-115 420.6 380 56.3
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 1.7e-115 420.2 363 59.0
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.7e-115 420.2 360 56.7
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 1.7e-115 420.2 393 55.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.7e-115 420.2 362 56.9
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.7e-115 420.2 362 56.6
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.3e-115 419.9 365 56.2
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 2.9e-115 419.5 360 56.7
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.9e-115 419.5 363 56.7
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.9e-115 419.5 362 56.1
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 5.0e-115 418.7 389 54.0
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 5.0e-115 418.7 361 56.5
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 6.6e-115 418.3 361 56.0
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 6.6e-115 418.3 381 55.9
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 8.6e-115 417.9 393 53.4
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 8.6e-115 417.9 362 56.9
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 8.6e-115 417.9 360 55.8
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 8.6e-115 417.9 362 56.1
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 8.6e-115 417.9 359 57.7
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 1.1e-114 417.5 361 56.5
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.1e-114 417.5 360 56.7
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 1.1e-114 417.5 362 55.8
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 1.1e-114 417.5 366 56.0
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.5e-114 417.2 396 53.8
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.5e-114 417.2 360 56.7
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.9e-114 416.8 368 56.0
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 2.5e-114 416.4 360 57.5
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.5e-114 416.4 358 55.9
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 3.3e-114 416.0 381 54.9
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 3.3e-114 416.0 362 56.4
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 3.3e-114 416.0 360 57.2
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 3.3e-114 416.0 360 55.8
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.3e-114 416.0 360 55.8
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 4.2e-114 415.6 369 55.3
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 4.2e-114 415.6 362 55.5
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 5.5e-114 415.2 362 55.5
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 7.2e-114 414.8 360 55.6
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.2e-113 414.1 396 52.3
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 1.2e-113 414.1 360 56.4
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.6e-113 413.7 358 55.0
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 1.6e-113 413.7 373 53.6
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 2.1e-113 413.3 391 53.2
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 2.1e-113 413.3 376 54.8
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 2.1e-113 413.3 380 54.5
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 2.8e-113 412.9 380 53.2
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.8e-113 412.9 369 55.0
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 2.8e-113 412.9 376 54.3
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 3.6e-113 412.5 380 54.5
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 4.7e-113 412.1 396 52.8
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 4.7e-113 412.1 359 54.9
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 6.1e-113 411.8 360 55.3
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 6.1e-113 411.8 380 54.2
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 6.1e-113 411.8 393 52.7
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 8.0e-113 411.4 362 55.8
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 8.0e-113 411.4 389 52.4
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 1.0e-112 411.0 369 55.0
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 1.0e-112 411.0 362 55.2
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.0e-112 411.0 390 53.1
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 1.0e-112 411.0 358 56.1
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 1.4e-112 410.6 388 53.6
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.4e-112 410.6 362 55.0
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.8e-112 410.2 381 54.1
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 1.8e-112 410.2 362 56.1
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 2.3e-112 409.8 391 52.7
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 2.3e-112 409.8 391 52.7
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 2.3e-112 409.8 373 53.9
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 3.0e-112 409.5 373 53.9
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 3.0e-112 409.5 383 54.0
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 6.8e-112 408.3 362 55.2
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 6.8e-112 408.3 362 56.6
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 6.8e-112 408.3 368 54.3
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 8.9e-112 407.9 362 54.7
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.5e-111 407.1 362 53.6
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 1.5e-111 407.1 375 54.1
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 1.5e-111 407.1 375 54.1
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 2.6e-111 406.4 371 54.2
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 3.4e-111 406.0 360 55.0
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 4.4e-111 405.6 360 55.0
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 5.7e-111 405.2 360 55.0
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 9.8e-111 404.4 362 54.4
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.3e-110 404.1 380 53.9
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 1.3e-110 404.1 396 53.5
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.7e-110 403.7 381 52.5
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 2.2e-110 403.3 409 53.1
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 8.3e-110 401.4 376 55.1
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.1e-109 401.0 396 51.0
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.4e-109 400.6 360 55.6
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 9.2e-109 397.9 359 54.9
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 8.6e-107 391.3 328 57.9
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 8.6e-107 391.3 357 53.5
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 2.5e-106 389.8 365 53.7
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 3.4e-103 379.4 330 58.5
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 3.4e-103 379.4 330 56.1
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 2.9e-102 376.3 328 56.1
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 3.7e-102 375.9 328 55.8
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 8.6e-99 364.8 361 52.4
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 5.4e-93 345.5 361 49.0
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 7.3e-90 335.1 359 49.6
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 5.2e-80 302.4 307 50.5
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.0e-75 288.1 371 43.7
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 3.3e-74 283.1 387 42.6
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 7.3e-74 282.0 387 42.1
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 2.1e-65 253.8 354 40.1
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.3e-59 234.6 427 35.1
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 1.1e-58 231.5 366 35.8
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 5.3e-56 222.6 364 37.6
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 3.7e-49 199.9 256 46.5
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 5.3e-48 196.1 242 46.7
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 1.5e-47 194.5 176 56.2
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.5e-47 194.5 248 41.9
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 1.7e-46 191.0 176 51.1
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 5.0e-46 189.5 176 51.1
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 7.9e-44 182.2 151 60.3
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 4.8e-41 172.9 229 42.8
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 3.4e-39 166.8 256 41.8
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.6e-36 157.9 187 47.6
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.3e-35 154.1 187 47.1
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.2e-33 147.5 177 46.9
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.1e-32 142.1 108 57.4
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 2.9e-30 137.1 163 48.5
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 7.9e-28 129.0 157 45.2
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.3e-27 127.5 104 53.8
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 3.0e-27 127.1 157 44.6
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 1.7e-25 121.3 157 43.3
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 4.1e-24 116.7 153 42.5
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 2.2e-22 110.9 150 41.3
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.5e-22 109.4 83 62.7
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 1.1e-21 108.6 150 40.7
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.1e-20 102.8 77 55.8
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.4e-18 96.7 86 54.7
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 5.7e-18 96.3 74 60.8
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 3.8e-14 83.6 82 53.7
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.8e-14 83.6 129 39.5
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.5e-14 82.8 61 57.4
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.5e-10 71.6 79 49.4
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 2.0e-10 71.2 63 61.9
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 3.4e-10 70.5 63 63.5
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 5.7e-10 69.7 64 59.4
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.7e-07 60.8 56 60.7
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.5e-07 60.5 56 51.8
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.8e-06 57.0 63 44.4


User provided reference genes

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