Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 5.9e-250 867.1 442 100.0
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.1e-115 421.0 424 54.0
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 4.3e-115 419.1 397 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 6.2e-114 415.2 404 54.5
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 2.0e-112 410.2 399 55.4
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.6e-112 409.8 399 53.6
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 1.3e-111 407.5 399 54.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.3e-111 407.5 394 54.8
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.7e-111 407.1 400 54.2
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 2.9e-111 406.4 396 55.3
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 3.7e-111 406.0 396 55.3
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 3.7e-111 406.0 399 53.4
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 4.9e-111 405.6 399 53.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 8.3e-111 404.8 394 55.8
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.1e-110 404.4 394 54.6
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 1.4e-110 404.1 401 54.1
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.9e-110 403.7 399 53.9
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 2.4e-110 403.3 392 56.1
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 2.4e-110 403.3 396 56.3
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.4e-110 403.3 394 55.1
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.4e-110 403.3 401 53.9
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 3.2e-110 402.9 387 56.8
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 3.2e-110 402.9 394 54.6
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 5.4e-110 402.1 396 54.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 5.4e-110 402.1 401 53.1
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 5.4e-110 402.1 400 54.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 7.1e-110 401.7 394 54.6
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 7.1e-110 401.7 398 54.5
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 7.1e-110 401.7 401 54.1
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 9.2e-110 401.4 392 55.4
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 9.2e-110 401.4 389 54.8
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.6e-109 400.6 398 54.3
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 1.6e-109 400.6 397 54.9
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.1e-109 400.2 399 54.1
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 2.1e-109 400.2 394 56.1
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 2.7e-109 399.8 431 50.1
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 3.5e-109 399.4 395 53.4
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 3.5e-109 399.4 405 53.3
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.5e-109 399.4 407 53.8
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 3.5e-109 399.4 400 54.2
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 6.0e-109 398.7 410 52.0
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 7.8e-109 398.3 373 56.8
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 7.8e-109 398.3 394 54.3
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.0e-108 397.9 394 54.6
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.0e-108 397.9 399 54.4
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.3e-108 397.5 399 53.4
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.7e-108 397.1 394 54.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 1.7e-108 397.1 401 54.1
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.3e-108 396.7 395 54.2
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 3.9e-108 396.0 399 54.4
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 3.9e-108 396.0 396 53.5
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-107 394.0 392 53.8
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 1.5e-107 394.0 380 54.7
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 2.5e-107 393.3 416 51.7
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 2.5e-107 393.3 387 54.5
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 3.3e-107 392.9 398 54.0
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 4.3e-107 392.5 417 51.8
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.6e-106 390.6 373 55.8
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 3.6e-106 389.4 421 50.6
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 6.8e-105 385.2 366 56.3
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 8.9e-105 384.8 425 50.6
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 8.9e-105 384.8 370 55.9
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.5e-104 384.0 428 50.9
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 5.8e-104 382.1 456 47.1
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.7e-103 380.6 386 54.1
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.9e-103 379.8 414 52.4
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 4.9e-103 379.0 362 57.5
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 2.4e-102 376.7 380 53.7
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.2e-101 374.4 395 52.7
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.0e-100 371.3 394 53.0
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.5e-99 367.5 447 48.3
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.9e-99 367.1 375 53.1
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 4.7e-98 362.5 434 48.6
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 5.8e-96 355.5 400 49.0
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.9e-95 353.2 335 56.7
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 2.9e-95 353.2 369 52.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 2.4e-94 350.1 398 50.0
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 1.2e-93 347.8 296 60.8
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 4.6e-93 345.9 395 51.1
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.0e-92 344.7 401 49.6
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 5.1e-92 342.4 412 48.1
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.4e-89 333.6 437 46.2
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.9e-86 323.9 330 54.5
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 1.9e-86 323.9 396 48.5
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.5e-85 319.7 405 47.4
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 6.0e-85 318.9 408 47.8
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.5e-83 314.3 397 46.1
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 7.3e-83 312.0 393 47.3
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.8e-81 307.4 391 45.5
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 5.3e-81 305.8 400 44.2
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.2e-79 300.4 363 47.4
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.9e-79 300.1 364 47.0
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.1e-77 293.9 306 53.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 2.7e-77 293.5 341 51.3
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 6.7e-76 288.9 241 62.7
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 4.6e-61 239.6 194 62.9
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 5.7e-59 232.6 260 49.6
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.5e-56 223.0 179 64.8
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.2e-55 220.7 176 65.3
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 2.5e-54 217.2 196 60.2
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 5.5e-54 216.1 259 48.3
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.4e-44 184.9 162 59.9
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 5.1e-44 183.0 128 68.0
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 8.8e-44 182.2 147 63.3
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 8.8e-44 182.2 153 60.8
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 2.6e-43 180.6 179 55.3
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 2.8e-42 177.2 322 37.3
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 3.5e-40 170.2 201 47.8
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 6.5e-39 166.0 210 46.2
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 6.5e-39 166.0 210 46.2
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 6.5e-39 166.0 210 46.2
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.2e-38 163.7 213 46.9
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 5.2e-36 156.4 150 53.3
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 3.3e-35 153.7 163 50.9
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 7.7e-32 142.5 178 43.3
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.7e-31 141.4 183 42.1
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.2e-31 141.0 99 72.7
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.9e-31 140.6 110 66.4
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 3.8e-31 140.2 181 43.6
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 3.4e-27 127.1 85 76.5
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.7e-26 123.6 163 40.5
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 1.0e-23 115.5 152 44.1
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 8.0e-21 105.9 83 65.1
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.0e-20 104.0 83 63.9
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 3.7e-18 97.1 77 63.6
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 5.4e-17 93.2 78 55.1
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 5.4e-17 93.2 138 44.9
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 7.0e-17 92.8 130 43.1
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 2.9e-15 87.4 116 44.8
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 4.3e-14 83.6 63 66.7
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.4e-11 73.9 85 48.2
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 1.7e-10 71.6 73 46.6
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 5.4e-09 66.6 99 38.4
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 5.6e-06 56.6 73 43.8


User provided reference genes

Program Settings