Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G557 Micromonas commoda HOM05D003163 ORTHO05D003504 0.0e+00 1389.8 716 100.0
CANSAT21G1563 Cannabis sativa HOM05D003163 ORTHO05D003504 7.1e-27 126.7 278 33.5
Sed0004811 Sechium edule HOM05D003163 ORTHO05D003504 1.6e-26 125.6 272 35.3
Eucgr.K02808 Eucalyptus grandis HOM05D003163 ORTHO05D003504 2.1e-26 125.2 276 33.0
FvH4_5g06050 Fragaria vesca HOM05D003163 ORTHO05D003504 4.6e-26 124.0 285 32.6
Os03g0126300 Oryza sativa ssp. japonica HOM05D003163 ORTHO05D003504 4.6e-26 124.0 250 36.8
MBI10_g00740_MAGBIO Magnolia biondii HOM05D003163 ORTHO05D003504 1.0e-25 122.9 295 32.9
Os02g0489500 Oryza sativa ssp. japonica HOM05D003163 ORTHO05D003504 3.0e-25 121.3 270 34.1
Cfa016044 Carpinus fangiana HOM05D003163 ORTHO05D003504 5.1e-25 120.6 277 32.9
Manes.14G061900 Manihot esculenta HOM05D003163 ORTHO05D003504 6.6e-25 120.2 284 32.0
Nn4g22643 Nelumbo nucifera HOM05D003163 ORTHO05D003504 8.7e-25 119.8 287 32.8
Haze_00412 Corylus avellana HOM05D003163 ORTHO05D003504 1.1e-24 119.4 275 32.7
Prupe.5G167300 Prunus persica HOM05D003163 ORTHO05D009144 1.9e-24 118.6 197 37.6
SMO358G0730 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 2.5e-24 118.2 302 34.1
SGA_v2.0_scaffold90G27859 Striga asiatica HOM05D003163 ORTHO05D003504 2.5e-24 118.2 284 33.5
Atru.chr9.2554 Acer truncatum HOM05D003163 ORTHO05D003504 3.3e-24 117.9 301 31.6
TAR374G0422 Trochodendron aralioides HOM05D003163 ORTHO05D003504 4.3e-24 117.5 274 32.8
PGR044G2024 Punica granatum HOM05D003163 ORTHO05D003504 7.3e-24 116.7 274 31.8
Sabra15G0105900 Salix brachista HOM05D003163 ORTHO05D003504 7.3e-24 116.7 289 31.1
MELO3C002291.2 Cucumis melo HOM05D003163 ORTHO05D003504 9.6e-24 116.3 272 33.5
FAN04G3202 Fragaria x ananassa HOM05D001141 ORTHO05D003504 9.6e-24 116.3 290 32.4
PSO384G3827 Papaver somniferum HOM05D003163 ORTHO05D003504 9.6e-24 116.3 277 32.5
Psat4g059560 Pisum sativum HOM05D003163 ORTHO05D003504 9.6e-24 116.3 292 30.5
RcHm_v2.0_Chr7g0192811 Rosa chinensis HOM05D003163 ORTHO05D003504 9.6e-24 116.3 276 30.8
ClCG01G013410 Citrullus lanatus HOM05D003163 ORTHO05D003504 2.1e-23 115.2 272 33.5
Aqoxy5G03795 Aquilegia oxysepala HOM05D003163 ORTHO05D003504 2.8e-23 114.8 300 29.0
Ciclev10021214m.g Citrus clementina HOM05D003163 ORTHO05D003504 4.8e-23 114.0 274 32.8
Duzib068G0058 Durio zibethinus HOM05D003163 ORTHO05D003504 4.8e-23 114.0 277 31.8
MD06G1167600 Malus domestica HOM05D003163 ORTHO05D003504 4.8e-23 114.0 197 36.5
Cpa.g.sc110.14 Carica papaya HOM05D003163 ORTHO05D003504 6.2e-23 113.6 273 32.2
Pp3c1_890 Physcomitrium patens HOM05D003163 ORTHO05D003504 6.2e-23 113.6 303 30.4
Cre07.g314450 Chlamydomonas reinhardtii HOM05D003163 ORTHO05D003504 8.1e-23 113.2 274 35.8
CsaV3_1G008760 Cucumis sativus L. HOM05D003163 ORTHO05D003504 1.1e-22 112.8 272 32.7
Lj9P444T58 Lonicera japonica HOM05D003163 ORTHO05D003504 1.1e-22 112.8 283 31.8
Medtr4g105140 Medicago truncatula HOM05D003163 ORTHO05D003504 1.1e-22 112.8 271 32.8
Thecc.03G021400 Theobroma cacao HOM05D003163 ORTHO05D003504 1.1e-22 112.8 275 31.6
Dinv38549 Davidia involucrata HOM05D003163 ORTHO05D003504 2.4e-22 111.7 298 31.5
Rhsim08G0176100 Rhododendron simsii HOM05D003163 ORTHO05D003504 2.4e-22 111.7 279 32.6
TPR.G37515 Trifolium pratense HOM05D003163 ORTHO05D003504 2.4e-22 111.7 275 31.3
QL10p007898 Quercus lobata HOM05D003163 ORTHO05D003504 4.0e-22 110.9 290 31.0
Ah.02g110700 Amaranthus hybridus HOM05D003163 ORTHO05D003504 5.3e-22 110.5 276 31.5
CDE05G0716 Ceratophyllum demersum HOM05D000044 ORTHO05D003504 5.3e-22 110.5 269 33.8
Gohir.A08G097848 Gossypium hirsutum HOM05D003163 ORTHO05D003504 5.3e-22 110.5 298 30.9
Potri.015G082432 Populus trichocarpa HOM05D003163 ORTHO05D003504 5.3e-22 110.5 277 30.3
TWI39G1165 Tripterygium wilfordii HOM05D003163 ORTHO05D003504 9.0e-22 109.8 277 31.8
CSS0002386 Camellia sinensis var. sinensis HOM05D003163 ORTHO05D003504 1.2e-21 109.4 276 32.2
Gohir.D08G107900 Gossypium hirsutum HOM05D003163 ORTHO05D003504 1.2e-21 109.4 198 35.4
Lsat_1_v5_gn_4_77041 Lactuca sativa HOM05D003163 ORTHO05D003504 1.2e-21 109.4 287 30.0
MSTRG.14629 Avicennia marina HOM05D003163 ORTHO05D003504 1.5e-21 109.0 198 35.9
COL.COLO4_30161 Corchorus olitorius HOM05D003163 ORTHO05D003504 1.5e-21 109.0 275 30.9
CiPaw.11G021900 Carya illinoinensis HOM05D003163 ORTHO05D003504 2.0e-21 108.6 290 31.0
Cre07.g313600 Chlamydomonas reinhardtii HOM05D003163 ORTHO05D003504 2.0e-21 108.6 266 35.0
Gorai.004G115500 Gossypium raimondii HOM05D003163 ORTHO05D003504 2.6e-21 108.2 281 31.3
DCAR_021578 Daucus carota HOM05D003163 ORTHO05D003504 3.4e-21 107.8 285 29.5
AUR62008159 Chenopodium quinoa HOM05D003163 ORTHO05D003504 5.8e-21 107.1 277 30.0
Cc04_g11780 Coffea canephora HOM05D003163 ORTHO05D003504 5.8e-21 107.1 273 31.5
AUR62028739 Chenopodium quinoa HOM05D003163 ORTHO05D003504 7.6e-21 106.7 277 30.0
SEGI_26446 Sequoiadendron giganteum HOM05D003163 ORTHO05D003504 7.6e-21 106.7 294 31.0
Pp3c5_18300 Physcomitrium patens HOM05D003163 ORTHO05D003504 9.9e-21 106.3 332 29.5
vmacro19317 Vaccinium macrocarpon HOM05D003163 ORTHO05D003504 9.9e-21 106.3 275 30.5
Sc10g0010180 Simmondsia chinensis HOM05D003163 ORTHO05D003504 1.3e-20 105.9 285 29.1
Pp3c1_3890 Physcomitrium patens HOM05D003163 ORTHO05D003504 2.2e-20 105.1 266 33.8
Carub.0008s2385 Capsella rubella HOM05D003163 ORTHO05D003504 2.9e-20 104.8 284 30.3
PSO832G3605 Papaver somniferum HOM05D003163 ORTHO05D003504 2.9e-20 104.8 232 32.8
Lj4g0004164 Lotus japonicus HOM05D003163 ORTHO05D003504 3.8e-20 104.4 273 31.9
SalBow5G3744 Salvia bowleyana HOM05D003163 ORTHO05D003504 3.8e-20 104.4 221 34.8
CSS0045781 Camellia sinensis var. sinensis HOM05D003163 ORTHO05D003504 4.9e-20 104.0 198 35.4
ATR0620G099 Amborella trichopoda HOM05D003163 ORTHO05D003504 6.4e-20 103.6 255 32.9
AT5G63100 Arabidopsis thaliana HOM05D003163 ORTHO05D003504 8.4e-20 103.2 228 32.0
Migut.O00141 Erythranthe guttata HOM05D003163 ORTHO05D003504 1.1e-19 102.8 277 30.0
CARHR276940 Cardamine hirsuta HOM05D003163 ORTHO05D003504 1.4e-19 102.4 285 30.2
AL8G40160 Arabidopsis lyrata HOM05D003163 ORTHO05D003504 1.9e-19 102.1 228 32.5
VMungo1215G1835 Vigna mungo HOM05D003163 ORTHO05D003504 1.9e-19 102.1 301 30.6
C09p09160 Brassica napus HOM05D003163 ORTHO05D003504 3.2e-19 101.3 231 32.0
BolC9t53829H Brassica oleracea HOM05D003163 ORTHO05D003504 3.2e-19 101.3 231 32.0
ECA232G2180 Erigeron canadensis HOM05D000637 ORTHO05D002686 4.2e-19 100.9 275 30.2
Sp2g26230 Schrenkiella parvula HOM05D003163 ORTHO05D003504 7.1e-19 100.1 231 32.0
HanXRQChr03g0093531 Helianthus annuus HOM05D003163 ORTHO05D003504 9.3e-19 99.8 240 32.9
Oeu023449.1 Olea europaea HOM05D003163 ORTHO05D003504 9.3e-19 99.8 210 32.9
Phvul.003G203700 Phaseolus vulgaris HOM05D003163 ORTHO05D003504 9.3e-19 99.8 273 31.5
THA.LOC104798967 Tarenaya hassleriana HOM05D003163 ORTHO05D003504 1.2e-18 99.4 229 31.9
CARHR178350 Cardamine hirsuta HOM05D003163 ORTHO05D003504 2.1e-18 98.6 246 31.3
AL8G15040 Arabidopsis lyrata HOM05D003163 ORTHO05D003504 2.7e-18 98.2 246 30.5
Carub.0008s0373 Capsella rubella HOM05D003163 ORTHO05D003504 2.7e-18 98.2 255 31.0
A09p08100 Brassica napus HOM05D003163 ORTHO05D003504 3.5e-18 97.8 231 31.6
BraA09t36461Z Brassica rapa HOM05D003163 ORTHO05D003504 3.5e-18 97.8 231 31.6
Thhalv10005653m.g Eutrema salsugineum HOM05D003163 ORTHO05D003504 3.5e-18 97.8 232 31.5
Lalb_Chr07g0182921 Lupinus albus HOM05D003163 ORTHO05D003504 3.5e-18 97.8 300 28.3
Nn7g37200 Nelumbo nucifera HOM05D003163 ORTHO05D003504 4.6e-18 97.4 252 32.9
CDE11G1064 Ceratophyllum demersum HOM05D003163 ORTHO05D003504 6.0e-18 97.1 191 34.6
Cc03_g01370 Coffea canephora HOM05D003163 ORTHO05D003504 7.9e-18 96.7 305 31.8
SMO169G0024 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 1.0e-17 96.3 141 39.0
Glyma.17G085800 Glycine max HOM05D003163 ORTHO05D003504 2.3e-17 95.1 294 28.9
Ah.08g214170 Amaranthus hybridus HOM05D003163 ORTHO05D003504 3.0e-17 94.7 251 30.3
Mapoly0036s0150 Marchantia polymorpha HOM05D003163 ORTHO05D003504 3.0e-17 94.7 390 27.2
AT5G44600 Arabidopsis thaliana HOM05D003163 ORTHO05D003504 3.9e-17 94.4 168 36.3
AagrBONN_evm.TU.Sc2ySwM_117.24 Anthoceros agrestis HOM05D003163 ORTHO05D003504 5.1e-17 94.0 366 25.4
Carub.0008s0374 Capsella rubella HOM05D003163 ORTHO05D003504 5.1e-17 94.0 170 35.9
SMO169G0034 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 5.1e-17 94.0 137 41.6
SMO169G0078 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 5.1e-17 94.0 137 41.6
EL10Ac4g07517 Beta vulgaris HOM05D003163 ORTHO05D003504 6.7e-17 93.6 218 33.5
Nitab4.5_0002358g0040 Nicotiana tabacum HOM05D001141 ORTHO05D003504 8.7e-17 93.2 274 28.1
BcaNung02578 Brassica carinata HOM05D003163 ORTHO05D003504 1.9e-16 92.0 256 30.1
A08p32400 Brassica napus HOM05D003163 ORTHO05D003504 3.3e-16 91.3 172 34.9
BolC8t49225H Brassica oleracea HOM05D003163 ORTHO05D003504 3.3e-16 91.3 256 30.1
Sp2g09390 Schrenkiella parvula HOM05D003163 ORTHO05D003504 3.3e-16 91.3 247 30.4
Nitab4.5_0005519g0050 Nicotiana tabacum HOM05D003163 ORTHO05D003504 4.3e-16 90.9 250 28.8
THA.LOC104806237 Tarenaya hassleriana HOM05D003163 ORTHO05D003504 4.3e-16 90.9 189 32.8
CDE09G1107 Ceratophyllum demersum HOM05D003163 ORTHO05D003504 5.6e-16 90.5 237 30.8
Lj2A145T59 Lonicera japonica HOM05D003163 ORTHO05D003504 5.6e-16 90.5 222 32.9
Solyc06g071670.1 Solanum lycopersicum HOM05D003163 ORTHO05D003504 1.3e-15 89.4 275 27.6
Sopen06g027980 Solanum pennellii HOM05D003163 ORTHO05D003504 1.3e-15 89.4 275 27.6
PGSC0003DMG400026990 Solanum tuberosum HOM05D003163 ORTHO05D003504 1.3e-15 89.4 274 26.6
CAN.G993.27 Capsicum annuum HOM05D003163 ORTHO05D003504 1.6e-15 89.0 274 27.7
Sc23g0006040 Simmondsia chinensis HOM05D003163 ORTHO05D003504 1.6e-15 89.0 142 38.7
Sopen08g004560 Solanum pennellii HOM05D003163 ORTHO05D003504 1.6e-15 89.0 234 29.9
Aa31LG9G8570 Aethionema arabicum HOM05D003163 ORTHO05D003504 2.8e-15 88.2 163 34.4
BcaB03g13157 Brassica carinata HOM05D003163 ORTHO05D003504 2.8e-15 88.2 197 33.0
AUR62017158 Chenopodium quinoa HOM05D003163 ORTHO05D003504 3.7e-15 87.8 249 30.9
Lsat_1_v5_gn_7_35520 Lactuca sativa HOM05D003163 ORTHO05D003504 3.7e-15 87.8 214 31.3
C08p16030 Brassica napus HOM05D003163 ORTHO05D003504 4.8e-15 87.4 257 30.0
AUR62035646 Chenopodium quinoa HOM05D003163 ORTHO05D003504 4.8e-15 87.4 225 32.4
Nitab4.5_0000799g0070 Nicotiana tabacum HOM05D003163 ORTHO05D003504 4.8e-15 87.4 244 29.1
VMungo1080G0527 Vigna mungo HOM05D003163 ORTHO05D003504 4.8e-15 87.4 226 30.5
GSVIVG01007672001 Vitis vinifera HOM05D003163 ORTHO05D003504 4.8e-15 87.4 186 34.9
CiPaw.16G078500 Carya illinoinensis HOM05D003163 ORTHO05D003504 6.2e-15 87.0 260 28.1
Nitab4.5_0000003g0760 Nicotiana tabacum HOM05D001141 ORTHO05D003504 8.1e-15 86.7 274 27.4
PGSC0003DMG400005855 Solanum tuberosum HOM05D003163 ORTHO05D003504 8.1e-15 86.7 234 29.1
Thhalv10000954m.g Eutrema salsugineum HOM05D003163 ORTHO05D003504 1.1e-14 86.3 251 29.9
QL04p096651 Quercus lobata HOM05D003163 ORTHO05D003504 1.1e-14 86.3 142 35.9
unitig_747.g21659 Utricularia gibba HOM05D003163 ORTHO05D003504 1.8e-14 85.5 216 31.5
BcaB04g19940 Brassica carinata HOM05D003163 ORTHO05D003504 5.3e-14 84.0 229 29.3
Peaxi162Scf01257g00028 Petunia axillaris HOM05D003163 ORTHO05D003504 1.5e-13 82.4 231 31.2
MD14G1173100 Malus domestica HOM05D003163 ORTHO05D003504 2.2e-12 78.6 196 32.1
Aa31LG1G18870 Aethionema arabicum HOM05D001141 ORTHO05D001088 1.6e-10 72.4 142 34.5
HPP92_014509 Vanilla planifolia HOM05D003163 ORTHO05D003504 7.4e-08 63.5 172 29.1
HPP92_014502 Vanilla planifolia HOM05D003163 ORTHO05D003504 1.3e-07 62.8 172 28.5
BolC8t49220H Brassica oleracea HOM05D016967 ORTHO05D003504 1.6e-07 62.4 133 34.6
MBI04_g47854_MAGBIO Magnolia biondii HOM05D003163 ORTHO05D003504 3.7e-07 61.2 117 35.0
Thecc.05G118200 Theobroma cacao HOM05D003163 ORTHO05D003504 3.7e-07 61.2 120 32.5
C08p15970 Brassica napus HOM05D016967 ORTHO05D003504 5.3e-06 57.4 92 34.8


User provided reference genes

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