Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 0.0e+00 1128.6 542 100.0
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 5.8e-106 389.0 490 43.7
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.4e-96 357.8 532 39.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.2e-95 354.8 491 40.7
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 7.9e-95 352.1 541 38.4
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.3e-94 350.5 485 40.6
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 2.3e-94 350.5 466 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.9e-94 349.7 453 41.9
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 1.6e-92 344.4 455 42.0
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 2.8e-92 343.6 464 40.7
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 3.6e-92 343.2 475 40.2
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 4.8e-92 342.8 463 40.4
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 6.2e-92 342.4 485 39.4
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 1.1e-91 341.7 524 37.8
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 1.1e-91 341.7 524 37.8
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.1e-91 341.7 524 37.8
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.4e-91 341.3 464 40.7
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 1.4e-91 341.3 507 38.7
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.8e-91 340.9 524 37.8
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.8e-91 340.9 462 40.7
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.4e-91 340.5 463 40.4
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 9.0e-91 338.6 514 38.1
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 9.0e-91 338.6 459 41.0
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.2e-90 338.2 453 40.8
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.2e-90 338.2 500 39.8
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 1.2e-90 338.2 470 39.1
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.2e-90 338.2 426 41.1
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.5e-90 337.8 457 39.8
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.0e-90 337.4 529 39.1
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 2.0e-90 337.4 455 40.0
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 2.6e-90 337.0 463 39.5
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 2.6e-90 337.0 480 38.5
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 3.4e-90 336.7 492 38.4
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 4.5e-90 336.3 467 38.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 4.5e-90 336.3 460 41.1
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 7.6e-90 335.5 460 39.6
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 9.9e-90 335.1 467 40.3
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.3e-89 334.7 527 38.5
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.3e-89 334.7 570 37.4
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 1.7e-89 334.3 453 39.3
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.7e-89 334.3 478 38.5
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 2.2e-89 334.0 506 37.9
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.9e-89 333.6 528 36.7
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.8e-89 333.2 484 39.3
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 3.8e-89 333.2 474 38.8
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 4.9e-89 332.8 461 40.6
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 4.9e-89 332.8 542 37.3
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 4.9e-89 332.8 462 39.6
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.4e-89 332.4 479 38.8
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.1e-88 331.6 466 38.2
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 1.1e-88 331.6 531 38.4
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.4e-88 331.3 524 37.2
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 2.4e-88 330.5 460 40.0
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 2.4e-88 330.5 458 40.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.4e-88 330.5 478 38.1
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 4.2e-88 329.7 458 40.6
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 4.2e-88 329.7 528 36.7
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 4.2e-88 329.7 457 39.4
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 7.1e-88 328.9 491 37.9
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 9.3e-88 328.6 478 39.1
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.6e-87 327.8 467 39.6
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.6e-87 327.8 453 40.4
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 2.7e-87 327.0 426 40.6
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 3.5e-87 326.6 472 38.8
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 6.0e-87 325.9 429 40.1
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.0e-87 325.9 524 37.0
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 7.9e-87 325.5 464 38.1
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.3e-86 324.7 462 39.6
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.8e-86 324.3 476 38.9
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.3e-86 323.9 548 36.1
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.0e-86 323.6 476 38.7
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 3.0e-86 323.6 501 36.9
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 8.7e-86 322.0 525 37.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.5e-85 321.2 317 47.3
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 3.3e-85 320.1 467 39.4
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.3e-85 319.7 421 40.4
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 5.6e-85 319.3 502 37.5
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 5.6e-85 319.3 477 40.3
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 7.4e-85 318.9 344 45.1
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 7.4e-85 318.9 467 39.8
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 3.7e-84 316.6 478 39.5
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.8e-84 316.2 488 36.9
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 4.8e-84 316.2 317 46.7
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 1.4e-83 314.7 315 48.3
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 3.1e-83 313.5 314 48.1
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.3e-83 312.8 422 41.0
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.2e-82 311.6 428 40.0
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.5e-82 311.2 418 40.2
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 2.6e-82 310.5 464 37.7
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.4e-82 310.1 452 38.7
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 7.6e-82 308.9 327 46.5
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 6.5e-81 305.8 481 36.6
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 8.4e-81 305.4 457 38.3
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 8.4e-81 305.4 472 38.1
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 1.9e-80 304.3 479 37.6
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 3.2e-80 303.5 473 38.3
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 3.5e-79 300.1 477 37.1
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 7.9e-79 298.9 457 37.4
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 4.5e-74 283.1 324 43.2
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.2e-73 280.8 271 48.0
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 3.8e-73 280.0 465 35.9
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 9.1e-67 258.8 369 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.5e-64 249.6 433 34.9
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.5e-58 231.5 186 57.0
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 8.5e-57 225.7 191 56.0
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.1e-53 215.3 252 43.7
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 5.7e-53 213.0 164 57.9
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.0e-49 202.2 143 62.2
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.9e-48 198.0 143 60.8
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 4.0e-46 190.3 356 32.9
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 2.0e-34 151.4 391 25.6
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 1.0e-25 122.5 174 35.6
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.8e-23 114.4 369 26.8
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 4.4e-21 107.1 234 30.8
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.1e-11 75.9 69 50.7


User provided reference genes

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