Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.2e-114 416.4 199 100.0
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 2.1e-29 133.3 190 41.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.2e-27 127.5 176 38.1
PRCOL_00003087 Prasinoderma coloniale HOM05D003826 ORTHO05D004479 5.9e-24 115.2 182 37.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-15 87.8 184 33.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 5.0e-15 85.5 182 33.5
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.1e-14 84.3 174 32.8
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.1e-14 84.3 174 32.8
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.9e-14 83.6 173 32.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.3e-14 82.8 173 34.1
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.3e-14 82.4 173 31.2
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 4.3e-14 82.4 180 33.9
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 7.3e-14 81.6 173 31.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 9.5e-14 81.3 183 32.8
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-13 80.9 183 32.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-13 80.5 174 32.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.8e-13 79.7 184 31.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.8e-13 79.7 184 31.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.6e-13 79.3 175 32.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.6e-13 79.3 178 30.9
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.7e-13 79.0 174 31.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 4.7e-13 79.0 184 31.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.2e-13 78.6 173 31.2
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.2e-13 78.6 176 29.0
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.2e-13 78.6 183 31.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 6.2e-13 78.6 174 31.6
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.2e-13 78.6 173 30.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 8.0e-13 78.2 178 30.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 8.0e-13 78.2 176 31.2
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 8.0e-13 78.2 174 31.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 8.0e-13 78.2 174 31.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.0e-13 78.2 173 32.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.0e-13 78.2 184 31.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.1e-12 77.8 173 31.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.1e-12 77.8 176 31.2
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.1e-12 77.8 171 30.4
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-12 77.8 176 33.5
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-12 77.4 180 30.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-12 77.4 180 30.6
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.4e-12 77.4 173 31.2
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.4e-12 77.4 174 31.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.4e-12 77.4 175 33.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-12 77.4 173 31.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.4e-12 77.4 173 30.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-12 77.4 184 31.0
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.8e-12 77.0 173 31.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-12 77.0 174 31.6
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-12 77.0 174 31.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.8e-12 77.0 180 29.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.8e-12 77.0 173 30.6
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.3e-12 76.6 173 31.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.3e-12 76.6 173 30.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.1e-12 76.3 173 29.5
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.1e-12 76.3 180 30.0
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 3.1e-12 76.3 175 31.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.1e-12 76.3 176 31.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.1e-12 76.3 174 30.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.1e-12 76.3 173 30.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 4.0e-12 75.9 173 30.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 4.0e-12 75.9 173 30.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.0e-12 75.9 186 31.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.0e-12 75.9 186 31.7
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.0e-12 75.9 181 28.2
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 4.0e-12 75.9 173 31.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.2e-12 75.5 175 29.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 5.2e-12 75.5 178 29.2
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.8e-12 75.1 173 31.2
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 6.8e-12 75.1 173 30.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 6.8e-12 75.1 173 31.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 6.8e-12 75.1 174 31.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 8.9e-12 74.7 179 30.7
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.2e-11 74.3 181 28.7
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.2e-11 74.3 188 30.9
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.2e-11 74.3 173 30.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.2e-11 74.3 184 28.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.2e-11 74.3 174 28.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.5e-11 73.9 181 28.2
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.5e-11 73.9 173 30.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.5e-11 73.9 175 30.9
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.5e-11 73.9 173 30.1
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-11 73.9 210 29.5
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.5e-11 73.9 173 30.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.5e-11 73.9 180 30.0
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.0e-11 73.6 173 30.6
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.0e-11 73.6 175 30.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.0e-11 73.6 175 30.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.6e-11 73.2 173 31.2
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.6e-11 73.2 176 29.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.4e-11 72.8 172 32.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-11 72.8 173 31.8
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.4e-11 72.8 172 30.8
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.4e-11 72.8 182 31.9
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.4e-11 72.8 173 30.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 4.4e-11 72.4 173 31.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 4.4e-11 72.4 173 28.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 4.4e-11 72.4 173 28.9
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.4e-11 72.4 177 29.4
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 5.8e-11 72.0 183 30.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.8e-11 72.0 175 29.7
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 9.8e-11 71.2 181 29.3
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 9.8e-11 71.2 173 30.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 9.8e-11 71.2 174 27.6
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.3e-10 70.9 173 30.1
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.7e-10 70.5 173 30.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.7e-10 70.5 174 30.5
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.2e-10 70.1 173 31.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.9e-10 69.7 176 29.5
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.9e-10 69.7 175 29.7
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.9e-10 69.7 177 30.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.7e-10 69.3 170 29.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.7e-10 69.3 172 32.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.7e-10 69.3 178 28.1
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.7e-10 69.3 178 28.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.7e-10 69.3 175 29.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.7e-10 69.3 174 31.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.7e-10 69.3 180 28.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.4e-10 68.6 106 33.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.3e-10 68.2 178 28.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.1e-09 67.8 109 33.0
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-09 67.4 178 28.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.4e-09 67.4 181 29.3
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.4e-09 67.4 174 29.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-09 67.4 106 35.8
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.4e-09 66.6 106 34.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.4e-09 66.6 178 29.8
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.4e-09 66.6 107 35.5
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.2e-09 66.2 108 38.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.2e-09 66.2 107 33.6
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.1e-09 65.9 169 32.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.1e-09 65.9 178 30.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 5.4e-09 65.5 109 32.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 5.4e-09 65.5 106 33.0
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 7.0e-09 65.1 107 31.8
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 9.2e-09 64.7 63 42.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.6e-08 63.9 61 42.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.0e-08 63.5 68 39.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-08 63.2 63 42.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.7e-08 63.2 106 34.0
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.7e-08 63.2 62 41.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.5e-08 62.8 106 31.1
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.5e-08 62.8 62 41.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 3.5e-08 62.8 106 33.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.6e-08 62.4 60 43.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 6.0e-08 62.0 68 41.2
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 6.0e-08 62.0 71 39.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.0e-08 62.0 107 33.6
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 7.8e-08 61.6 66 39.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.8e-08 61.6 61 41.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.0e-07 61.2 107 29.9
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.7e-07 60.5 108 32.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.0e-07 59.7 109 31.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.9e-07 59.3 117 29.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.0e-07 58.9 176 26.7
MCO16G283 Micromonas commoda HOM05D003826 ORTHO05D269155 6.6e-07 58.5 212 25.9
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.6e-07 58.2 192 26.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 8.6e-07 58.2 171 26.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.1e-06 57.8 66 39.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.1e-06 57.8 114 29.8
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.9e-06 57.0 59 40.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.5e-06 56.6 59 39.0
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 7.3e-06 55.1 120 29.2


User provided reference genes

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