Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 1.9e-118 429.1 200 100.0
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 5.3e-57 224.9 195 54.4
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 8.5e-55 217.6 180 56.7
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 4.7e-53 211.8 179 55.9
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 1.8e-52 209.9 185 55.1
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 1.8e-52 209.9 190 53.7
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 4.0e-52 208.8 185 54.6
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 5.2e-52 208.4 185 55.1
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 5.2e-52 208.4 184 54.9
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 5.2e-52 208.4 184 54.3
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 6.8e-52 208.0 184 53.8
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 6.8e-52 208.0 187 55.6
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 1.2e-51 207.2 182 53.8
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 1.5e-51 206.8 184 53.8
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.5e-51 206.8 184 54.3
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.5e-51 206.8 184 53.8
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.5e-51 206.8 185 56.8
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 2.0e-51 206.5 182 53.3
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 2.6e-51 206.1 182 53.3
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 2.6e-51 206.1 184 53.8
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.6e-51 206.1 187 53.5
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.6e-51 206.1 179 55.9
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.6e-51 206.1 182 53.3
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 3.4e-51 205.7 182 53.3
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 3.4e-51 205.7 182 53.3
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 3.4e-51 205.7 184 53.3
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 3.4e-51 205.7 182 53.3
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 3.4e-51 205.7 184 53.8
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 3.4e-51 205.7 185 54.1
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.4e-51 205.3 184 53.8
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 4.4e-51 205.3 184 52.7
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 4.4e-51 205.3 182 53.3
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 4.4e-51 205.3 183 54.1
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 4.4e-51 205.3 187 54.5
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 4.4e-51 205.3 184 53.8
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 4.4e-51 205.3 182 52.7
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-51 204.9 182 53.3
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 5.7e-51 204.9 183 53.6
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 5.7e-51 204.9 182 53.3
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 5.7e-51 204.9 183 53.6
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 5.7e-51 204.9 180 53.9
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 5.7e-51 204.9 184 53.3
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 5.7e-51 204.9 183 53.6
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 5.7e-51 204.9 183 53.6
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 5.7e-51 204.9 183 54.1
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 7.5e-51 204.5 182 52.7
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 7.5e-51 204.5 189 52.9
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 9.8e-51 204.1 182 52.7
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 9.8e-51 204.1 182 52.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 9.8e-51 204.1 184 53.8
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 1.3e-50 203.8 180 53.9
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 1.3e-50 203.8 184 53.3
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.3e-50 203.8 185 54.1
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 1.7e-50 203.4 183 53.6
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 1.7e-50 203.4 184 53.3
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 1.7e-50 203.4 184 52.2
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 1.7e-50 203.4 180 53.9
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.7e-50 203.4 184 53.8
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.7e-50 203.4 184 53.8
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.7e-50 203.4 185 53.0
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 1.7e-50 203.4 182 54.9
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 2.2e-50 203.0 183 53.0
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 2.2e-50 203.0 183 53.0
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 2.2e-50 203.0 191 52.4
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 2.2e-50 203.0 180 53.3
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 2.2e-50 203.0 184 52.2
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 2.8e-50 202.6 180 53.3
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 2.8e-50 202.6 183 53.6
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 2.8e-50 202.6 182 53.3
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 2.8e-50 202.6 180 54.4
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 2.8e-50 202.6 182 53.8
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 2.8e-50 202.6 181 53.0
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 3.7e-50 202.2 183 53.0
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 3.7e-50 202.2 184 51.6
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.7e-50 202.2 184 52.7
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 3.7e-50 202.2 182 53.3
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 3.7e-50 202.2 184 52.7
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 4.8e-50 201.8 188 51.6
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 4.8e-50 201.8 185 53.0
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 4.8e-50 201.8 184 52.7
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.8e-50 201.8 182 52.2
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.8e-50 201.8 182 52.2
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 4.8e-50 201.8 184 52.2
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 4.8e-50 201.8 184 52.2
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 6.3e-50 201.4 188 51.6
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 6.3e-50 201.4 184 52.7
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 6.3e-50 201.4 180 51.7
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 6.3e-50 201.4 184 51.6
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 8.3e-50 201.1 182 54.9
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 8.3e-50 201.1 179 53.6
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 8.3e-50 201.1 183 53.6
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 8.3e-50 201.1 184 52.2
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 8.3e-50 201.1 184 52.2
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.1e-49 200.7 184 52.7
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.1e-49 200.7 184 52.7
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 1.1e-49 200.7 182 52.7
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.1e-49 200.7 185 53.0
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.1e-49 200.7 184 52.7
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 1.1e-49 200.7 182 51.1
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.1e-49 200.7 185 51.9
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.1e-49 200.7 185 51.9
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.1e-49 200.7 184 51.1
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 1.4e-49 200.3 180 53.9
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.4e-49 200.3 182 51.1
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.4e-49 200.3 184 52.2
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 1.8e-49 199.9 182 51.6
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 1.8e-49 199.9 182 51.6
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.8e-49 199.9 184 52.7
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.4e-49 199.5 184 51.1
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 2.4e-49 199.5 184 51.1
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.4e-49 199.5 182 54.4
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 2.4e-49 199.5 184 53.3
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 2.4e-49 199.5 180 53.3
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 2.4e-49 199.5 182 51.1
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.1e-49 199.1 184 52.7
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.1e-49 199.1 182 51.6
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 3.1e-49 199.1 184 51.1
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 3.1e-49 199.1 185 53.0
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 4.1e-49 198.7 182 52.7
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 4.1e-49 198.7 182 52.7
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 4.1e-49 198.7 182 51.6
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 7.0e-49 198.0 184 52.7
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 7.0e-49 198.0 178 56.7
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 7.0e-49 198.0 180 53.9
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.6e-48 196.8 187 49.2
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 1.6e-48 196.8 184 50.5
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.6e-48 196.8 193 50.8
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.6e-48 196.8 182 54.4
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.0e-48 196.4 178 55.6
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 2.7e-48 196.1 184 50.5
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 2.7e-48 196.1 186 53.8
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 4.5e-48 195.3 184 50.0
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 5.9e-48 194.9 172 53.5
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 1.3e-47 193.7 186 50.5
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 2.9e-47 192.6 171 53.8
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 3.8e-47 192.2 206 47.1
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 6.5e-47 191.4 176 53.4
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 1.1e-46 190.7 175 54.3
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 1.5e-46 190.3 185 49.7
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 2.5e-46 189.5 184 49.5
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 2.8e-45 186.0 179 53.6
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 1.5e-43 180.3 234 41.5
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 2.0e-43 179.9 218 44.5
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 1.7e-42 176.8 206 44.7
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 2.2e-42 176.4 218 43.6
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 7.0e-41 171.4 179 52.0
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 5.9e-40 168.3 157 54.1
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.0e-39 167.5 186 47.8
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 7.3e-38 161.4 178 43.3
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 7.3e-38 161.4 153 49.7
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 3.6e-37 159.1 187 43.9
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.0e-32 143.3 182 41.8
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.0e-31 141.0 199 41.7
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.9e-30 136.7 182 40.1
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 2.3e-28 129.8 115 53.9
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 8.3e-26 121.3 95 58.9
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 1.6e-24 117.1 105 53.3
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 5.2e-20 102.1 98 52.0
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 6.8e-20 101.7 84 56.0
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 8.9e-20 101.3 84 56.0
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 8.9e-20 101.3 90 53.3
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 2.0e-19 100.1 84 54.8
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 3.4e-19 99.4 90 52.2
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 4.4e-19 99.0 145 38.6
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 9.9e-19 97.8 90 52.2
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 1.1e-17 94.4 121 38.8
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 1.9e-17 93.6 106 43.4
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 4.1e-17 92.4 80 53.8
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 2.7e-16 89.7 94 46.8
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 6.6e-15 85.1 74 56.8
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 6.6e-15 85.1 88 50.0
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-14 84.3 71 53.5
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.3e-14 82.4 73 53.4
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 1.8e-12 77.0 63 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 3.4e-11 72.8 52 65.4
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 5.8e-11 72.0 136 34.6
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 4.9e-10 68.9 197 32.5
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 4.9e-10 68.9 47 61.7
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 8.4e-10 68.2 88 39.8
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 1.4e-09 67.4 65 52.3
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.3e-06 55.8 38 63.2


User provided reference genes

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