Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 0.0e+00 1909.8 1008 100.0
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 3.8e-175 619.8 1083 36.8
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 1.1e-169 601.7 1109 35.7
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 9.9e-168 595.1 1123 35.1
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 2.9e-159 567.0 1091 34.5
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 4.6e-157 559.7 1081 34.2
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 1.1e-155 555.1 1081 33.5
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 2.1e-154 550.8 1080 33.9
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 3.7e-154 550.1 1091 33.7
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 3.7e-154 550.1 1079 33.9
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 6.2e-154 549.3 1089 33.4
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 6.2e-154 549.3 1088 33.9
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 2.4e-153 547.4 1081 33.7
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 3.1e-153 547.0 1091 32.9
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 4.0e-153 546.6 1060 34.1
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 4.0e-153 546.6 1082 33.9
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 4.0e-153 546.6 1074 33.4
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 9.0e-153 545.4 1089 33.0
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 1.5e-152 544.7 1091 33.0
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 2.0e-152 544.3 1082 33.5
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 2.6e-152 543.9 1091 32.9
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 2.6e-152 543.9 1086 33.4
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 3.4e-152 543.5 1088 33.2
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 3.4e-152 543.5 1089 33.6
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 3.4e-152 543.5 1089 33.6
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.5e-152 543.1 1092 33.3
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 4.5e-152 543.1 1083 33.5
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 5.8e-152 542.7 1081 33.7
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 1.0e-151 542.0 1083 33.2
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 1.0e-151 542.0 1092 33.5
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 1.3e-151 541.6 1092 32.8
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 1.3e-151 541.6 1093 32.8
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 1.3e-151 541.6 1091 33.1
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.3e-151 541.6 1083 33.4
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 3.8e-151 540.0 1089 32.8
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 3.8e-151 540.0 1091 33.0
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 4.9e-151 539.7 1082 33.1
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 4.9e-151 539.7 1092 32.8
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 8.4e-151 538.9 1084 33.4
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.1e-150 538.5 1075 33.9
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 1.1e-150 538.5 1077 33.9
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.4e-150 538.1 1086 33.4
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 3.2e-150 537.0 1100 33.1
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 3.2e-150 537.0 1091 33.3
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 4.2e-150 536.6 1093 33.6
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 4.2e-150 536.6 1090 32.8
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 7.1e-150 535.8 1083 32.6
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 1.2e-149 535.0 1090 33.3
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 1.2e-149 535.0 1098 32.7
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 2.1e-149 534.3 1092 32.2
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 2.7e-149 533.9 1101 32.6
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 3.5e-149 533.5 1087 32.7
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 3.5e-149 533.5 1098 33.2
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 4.6e-149 533.1 1105 32.6
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 1.0e-148 531.9 1096 32.9
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 1.3e-148 531.6 1077 33.1
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 1.8e-148 531.2 1094 32.9
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 3.0e-148 530.4 1087 33.2
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 3.9e-148 530.0 1081 32.8
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 6.7e-148 529.3 1092 32.7
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 6.7e-148 529.3 1081 32.7
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 6.7e-148 529.3 1094 32.2
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 8.7e-148 528.9 1079 33.0
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.5e-147 528.1 1102 33.3
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 1.5e-147 528.1 1090 32.8
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 3.3e-147 526.9 1078 33.2
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 9.6e-147 525.4 1082 32.9
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 2.1e-146 524.2 1104 32.4
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 2.8e-146 523.9 1080 33.1
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 2.8e-146 523.9 1087 32.2
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 3.7e-146 523.5 1080 32.5
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 8.2e-146 522.3 1081 32.2
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 8.2e-146 522.3 1080 32.5
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 1.1e-145 521.9 1086 32.5
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 1.8e-145 521.2 1090 32.7
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 2.4e-145 520.8 1095 32.5
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 5.3e-145 519.6 1093 32.3
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 1.2e-144 518.5 1096 32.6
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 1.5e-144 518.1 1087 32.0
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 1.5e-144 518.1 1072 32.4
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 1.0e-143 515.4 1092 32.6
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.3e-143 515.0 1021 34.0
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 3.8e-143 513.5 1081 32.3
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 8.4e-143 512.3 1092 33.1
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 2.5e-142 510.8 1110 31.6
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 9.3e-142 508.8 1112 32.6
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 2.1e-141 507.7 1117 31.7
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 3.5e-141 506.9 1079 32.3
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 1.8e-140 504.6 1080 31.6
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 2.3e-140 504.2 1089 31.5
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.9e-139 501.1 1026 32.3
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 2.5e-139 500.7 1064 32.3
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.3e-138 498.4 1098 32.6
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 4.8e-138 496.5 1092 31.3
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 4.8e-138 496.5 1077 31.2
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 3.0e-132 477.2 1187 30.0
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 1.1e-131 475.3 1080 31.5
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 3.3e-131 473.8 1131 30.9
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.3e-130 471.9 1090 30.8
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 1.3e-130 471.9 1068 32.1
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 3.7e-130 470.3 994 32.4
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 3.8e-127 460.3 1085 30.2
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 5.5e-126 456.4 888 34.9
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 5.5e-126 456.4 1082 30.0
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 1.2e-125 455.3 1086 30.7
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 8.8e-124 449.1 1092 31.0
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 7.7e-120 436.0 897 33.0
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 9.4e-118 429.1 1108 29.2
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 1.3e-111 408.7 956 29.9
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 1.6e-109 401.7 756 33.2
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 4.4e-107 393.7 888 31.5
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 2.0e-99 368.2 1036 28.8
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 9.5e-94 349.4 516 39.0
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 2.0e-83 315.1 674 31.3
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 1.5e-78 298.9 802 28.8
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 5.6e-70 270.4 753 27.1
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 1.8e-68 265.4 255 52.5
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 4.0e-68 264.2 298 47.0
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 1.3e-66 259.2 347 43.2
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 1.4e-65 255.8 677 28.4
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 1.1e-52 213.0 721 27.2
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.6e-48 199.1 455 30.1
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 2.3e-47 195.3 465 30.8
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 5.5e-41 174.1 517 26.9
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 5.9e-27 127.5 136 51.5
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 4.2e-25 121.3 120 50.0
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 6.3e-21 107.5 219 28.8
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 8.5e-18 97.1 144 37.5
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 5.1e-15 87.8 175 31.4
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 1.1e-14 86.7 115 41.7
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 2.0e-14 85.9 103 42.7
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 4.4e-14 84.7 139 37.4
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.1e-12 80.1 60 58.3
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 2.4e-12 79.0 91 47.3
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 6.9e-12 77.4 127 35.4
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 9.1e-12 77.0 60 56.7
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.2e-11 76.6 89 47.2
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.4e-07 63.2 62 46.8


User provided reference genes

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