Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 9.6e-89 330.1 162 100.0
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 1.6e-19 100.1 152 39.5
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 4.7e-19 98.6 152 38.8
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 5.2e-18 95.1 152 35.5
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 6.8e-18 94.7 152 37.5
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 6.8e-18 94.7 152 38.2
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 6.8e-18 94.7 152 36.8
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 6.8e-18 94.7 152 37.5
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 8.8e-18 94.4 152 36.8
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 8.8e-18 94.4 152 37.5
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 8.8e-18 94.4 152 38.2
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 2.0e-17 93.2 152 36.8
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 2.0e-17 93.2 152 36.8
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 2.0e-17 93.2 152 36.8
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 2.0e-17 93.2 152 36.8
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 2.0e-17 93.2 152 36.8
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 2.6e-17 92.8 152 36.2
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 2.6e-17 92.8 152 36.2
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 3.4e-17 92.4 152 36.2
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 4.4e-17 92.0 152 36.2
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.4e-17 92.0 152 34.9
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 4.4e-17 92.0 152 36.2
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 4.4e-17 92.0 152 35.5
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 4.4e-17 92.0 152 35.5
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 36.2
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 36.8
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 34.9
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 34.9
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 34.9
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 36.2
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 36.2
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 5.7e-17 91.7 152 35.5
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 7.5e-17 91.3 152 35.5
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 7.5e-17 91.3 152 35.5
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 9.8e-17 90.9 152 35.5
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 9.8e-17 90.9 152 36.2
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 1.3e-16 90.5 152 35.5
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.3e-16 90.5 152 34.9
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.7e-16 90.1 152 36.8
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 1.7e-16 90.1 152 36.2
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 1.7e-16 90.1 152 36.2
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 2.2e-16 89.7 152 34.9
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 2.2e-16 89.7 152 34.9
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 2.2e-16 89.7 152 36.2
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 2.2e-16 89.7 152 34.9
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.2e-16 89.7 152 34.9
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 2.8e-16 89.4 152 34.9
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.8e-16 89.4 152 35.5
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 2.8e-16 89.4 152 34.9
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 2.8e-16 89.4 152 34.2
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 3.7e-16 89.0 152 34.9
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 3.7e-16 89.0 152 34.9
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 3.7e-16 89.0 152 34.2
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 3.7e-16 89.0 152 34.2
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 3.7e-16 89.0 152 35.5
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 4.8e-16 88.6 152 35.5
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 6.3e-16 88.2 152 34.2
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 6.3e-16 88.2 152 35.5
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 6.3e-16 88.2 152 34.2
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 6.3e-16 88.2 152 34.9
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 8.3e-16 87.8 153 34.6
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 8.3e-16 87.8 152 35.5
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 8.3e-16 87.8 152 35.5
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 8.3e-16 87.8 152 33.6
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 8.3e-16 87.8 152 33.6
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 8.3e-16 87.8 152 34.2
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 8.3e-16 87.8 153 33.3
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.1e-15 87.4 152 32.9
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 1.4e-15 87.0 152 34.2
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 1.4e-15 87.0 150 36.0
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.8e-15 86.7 152 33.6
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 1.8e-15 86.7 152 32.9
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.8e-15 86.7 152 34.2
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 1.8e-15 86.7 152 33.6
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 2.4e-15 86.3 158 32.9
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 2.4e-15 86.3 152 33.6
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 2.4e-15 86.3 152 33.6
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 3.1e-15 85.9 152 35.5
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 3.1e-15 85.9 152 34.9
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 3.1e-15 85.9 152 33.6
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 4.1e-15 85.5 152 33.6
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 4.1e-15 85.5 152 32.2
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 4.1e-15 85.5 152 32.2
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 4.1e-15 85.5 152 32.2
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.4e-15 85.1 155 38.1
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 5.4e-15 85.1 152 32.9
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 5.4e-15 85.1 152 31.6
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 5.4e-15 85.1 152 32.9
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 7.0e-15 84.7 152 32.9
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 7.0e-15 84.7 152 33.6
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.2e-14 84.0 152 31.6
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.0e-14 83.2 152 31.6
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.5e-14 82.4 153 32.0
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.5e-14 82.4 152 31.6
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 3.5e-14 82.4 152 31.6
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.9e-14 81.6 152 33.6
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.3e-13 80.5 172 30.8
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.3e-13 80.5 152 34.2
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 1.7e-13 80.1 162 32.1
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 1.7e-13 80.1 152 32.2
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 2.2e-13 79.7 158 31.0
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 5.0e-13 78.6 132 35.6
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 5.0e-13 78.6 132 35.6
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 8.5e-13 77.8 151 32.5
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 8.5e-13 77.8 152 33.6
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.9e-12 76.6 134 35.8
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 1.9e-12 76.6 132 34.1
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 3.2e-12 75.9 127 35.4
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 4.2e-12 75.5 132 33.3
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 5.5e-12 75.1 132 34.8
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 1.2e-11 73.9 132 32.6
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-11 73.6 132 32.6
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.1e-11 73.2 121 35.5
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 3.6e-11 72.4 132 33.3
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 4.7e-11 72.0 83 42.2
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-10 70.9 84 42.9
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.4e-10 70.5 152 30.3
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.3e-10 69.7 83 43.4
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 2.3e-10 69.7 132 31.8
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 3.0e-10 69.3 125 33.6
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 4.0e-10 68.9 132 32.6
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 4.0e-10 68.9 83 42.2
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.8e-10 68.2 78 44.9
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 2.6e-09 66.2 159 33.3
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 5.7e-09 65.1 134 31.3
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.7e-08 63.5 84 40.5
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.1e-07 60.8 128 29.7


User provided reference genes

Program Settings