Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G373 Micromonas commoda HOM05D000804 ORTHO05D005389 0.0e+00 2565.0 1269 100.0
THA.LOC104825451 Tarenaya hassleriana HOM05D000804 ORTHO05D005389 3.4e-48 198.4 1264 22.6
SalBow4G2892 Salvia bowleyana HOM05D000804 ORTHO05D005389 4.6e-45 188.0 1292 24.5
AagrBONN_evm.TU.Sc2ySwM_117.1272 Anthoceros agrestis HOM05D000804 ORTHO05D005389 4.8e-42 177.9 878 25.3
SMO145G0113 Selaginella moellendorffii HOM05D000804 ORTHO05D005389 7.1e-38 164.1 807 25.5
DCAR_029554 Daucus carota HOM05D000804 ORTHO05D005389 1.0e-36 160.2 1108 21.9
FAN10G1244 Fragaria x ananassa HOM05D000804 ORTHO05D005389 1.7e-36 159.5 1178 21.3
Manes.09G131500 Manihot esculenta HOM05D000804 ORTHO05D005389 5.6e-35 154.5 1100 22.2
AL7G44840 Arabidopsis lyrata HOM05D000804 ORTHO05D005389 2.1e-34 152.5 830 23.9
Carub.0007s3171 Capsella rubella HOM05D000804 ORTHO05D005389 3.6e-34 151.8 869 25.3
FAN06G2879 Fragaria x ananassa HOM05D000804 ORTHO05D005389 2.4e-33 149.1 858 23.2
AT5G35930 Arabidopsis thaliana HOM05D000804 ORTHO05D005389 4.0e-33 148.3 832 23.7
Thhalv10003545m.g Eutrema salsugineum HOM05D000804 ORTHO05D005389 5.3e-33 147.9 851 24.0
Zm00001eb378990 Zea mays HOM05D000804 ORTHO05D005389 5.3e-33 147.9 894 24.0
CARHR216700 Cardamine hirsuta HOM05D000804 ORTHO05D005389 3.4e-32 145.2 844 23.2
EL10Ac5g10540 Beta vulgaris HOM05D000804 ORTHO05D005389 4.5e-32 144.8 843 24.3
RcHm_v2.0_Chr1g0337111 Rosa chinensis HOM05D000804 ORTHO05D005389 4.5e-32 144.8 854 23.2
Glyma.03G021000 Glycine max HOM05D000804 ORTHO05D005389 2.2e-31 142.5 862 23.1
FAN01G2963 Fragaria x ananassa HOM05D000804 ORTHO05D005389 4.9e-31 141.4 914 22.2
Gohir.A13G075600 Gossypium hirsutum HOM05D000804 ORTHO05D005389 4.9e-31 141.4 883 22.9
Gorai.013G111900 Gossypium raimondii HOM05D000804 ORTHO05D005389 4.9e-31 141.4 886 22.6
Sp7g06220 Schrenkiella parvula HOM05D000804 ORTHO05D005389 6.4e-31 141.0 840 23.9
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 8.4e-31 140.6 993 22.7
AUR62028598 Chenopodium quinoa HOM05D000804 ORTHO05D005389 3.2e-30 138.7 867 23.9
Lj7C558T5 Lonicera japonica HOM05D000804 ORTHO05D005389 3.2e-30 138.7 828 24.0
TPR.G30883 Trifolium pratense HOM05D000804 ORTHO05D005389 3.2e-30 138.7 876 24.0
Gohir.D13G099900 Gossypium hirsutum HOM05D000804 ORTHO05D005389 4.2e-30 138.3 888 22.3
Sed0024810 Sechium edule HOM05D000804 ORTHO05D005389 4.2e-30 138.3 886 23.0
Dinv43539 Davidia involucrata HOM05D000804 ORTHO05D005389 7.1e-30 137.5 905 23.1
SGA_v2.0_scaffold4G02207 Striga asiatica HOM05D000804 ORTHO05D005389 7.1e-30 137.5 921 23.0
Ah.02g110870 Amaranthus hybridus HOM05D000804 ORTHO05D005389 9.3e-30 137.1 843 22.4
ClCG06G008140 Citrullus lanatus HOM05D000804 ORTHO05D005389 9.3e-30 137.1 883 22.8
AUR62017553 Chenopodium quinoa HOM05D000804 ORTHO05D005389 1.6e-29 136.3 866 23.8
Os06g0111600 Oryza sativa ssp. japonica HOM05D000804 ORTHO05D005389 2.7e-29 135.6 864 24.0
Medtr8g035620 Medicago truncatula HOM05D000804 ORTHO05D005389 6.0e-29 134.4 897 23.4
Lalb_Chr07g0189561 Lupinus albus HOM05D000804 ORTHO05D005389 7.9e-29 134.0 838 23.9
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 1.0e-28 133.7 896 22.4
HPP92_005377 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.0e-28 133.7 915 22.0
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 1.3e-28 133.3 814 23.0
Phvul.010G085900 Phaseolus vulgaris HOM05D000804 ORTHO05D005389 1.8e-28 132.9 868 22.6
Atru.chr2.1715 Acer truncatum HOM05D000804 ORTHO05D005389 2.3e-28 132.5 885 21.4
QL04p052206 Quercus lobata HOM05D000804 ORTHO05D005389 2.3e-28 132.5 905 23.1
arahy.Tifrunner.gnm1.ann1.A8SNFY Arachis hypogaea HOM05D000804 ORTHO05D005389 3.0e-28 132.1 895 23.4
GSVIVG01011337001 Vitis vinifera HOM05D000804 ORTHO05D005389 3.9e-28 131.7 884 23.0
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 5.1e-28 131.3 870 23.4
BolC8t48020H Brassica oleracea HOM05D000804 ORTHO05D005389 1.1e-27 130.2 830 21.9
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 1.5e-27 129.8 890 22.2
Potri.019G043800 Populus trichocarpa HOM05D000804 ORTHO05D005389 1.9e-27 129.4 856 22.3
Aqoxy3G02136 Aquilegia oxysepala HOM05D000804 ORTHO05D005389 2.5e-27 129.0 878 23.2
arahy.Tifrunner.gnm1.ann1.00QVML Arachis hypogaea HOM05D000804 ORTHO05D005389 3.3e-27 128.6 895 23.1
Cc02_g26260 Coffea canephora HOM05D000804 ORTHO05D005389 3.3e-27 128.6 890 23.0
BcaC07g37648 Brassica carinata HOM05D000804 ORTHO05D005389 5.6e-27 127.9 828 21.7
CSS0037336 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D005389 5.6e-27 127.9 880 22.6
Psat4g196240 Pisum sativum HOM05D000804 ORTHO05D005389 5.6e-27 127.9 886 22.6
HanXRQChr01g0020521 Helianthus annuus HOM05D000804 ORTHO05D005389 7.4e-27 127.5 820 22.7
A08p09490 Brassica napus HOM05D000804 ORTHO05D005389 9.6e-27 127.1 840 21.8
BraA08t32948Z Brassica rapa HOM05D000804 ORTHO05D005389 9.6e-27 127.1 840 21.8
Sabra19G0054400 Salix brachista HOM05D000804 ORTHO05D005389 1.3e-26 126.7 884 23.2
Nn1g09657 Nelumbo nucifera HOM05D000804 ORTHO05D005389 1.6e-26 126.3 889 22.4
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 4.8e-26 124.8 843 23.8
Peaxi162Scf00592g00212 Petunia axillaris HOM05D000804 ORTHO05D005389 1.1e-25 123.6 905 23.2
MSTRG.4983 Avicennia marina HOM05D000804 ORTHO05D005389 3.1e-25 122.1 888 22.5
CAN.G700.21 Capsicum annuum HOM05D000804 ORTHO05D005389 5.3e-25 121.3 862 22.5
Duzib128G1116 Durio zibethinus HOM05D000804 ORTHO05D005389 5.3e-25 121.3 863 22.1
Prupe.2G098200 Prunus persica HOM05D000804 ORTHO05D005389 6.9e-25 120.9 879 22.0
Aa31LG9G17950 Aethionema arabicum HOM05D000804 ORTHO05D005389 9.0e-25 120.6 849 23.0
Lj3g0026096 Lotus japonicus HOM05D000804 ORTHO05D005389 3.4e-24 118.6 882 22.1
Ciclev10030562m.g Citrus clementina HOM05D000804 ORTHO05D005389 1.0e-23 117.1 842 21.9
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 1.7e-23 116.3 883 22.0
ECA248G3066 Erigeron canadensis HOM05D000804 ORTHO05D005389 1.7e-23 116.3 840 22.3
Eucgr.D01046 Eucalyptus grandis HOM05D000804 ORTHO05D005389 6.5e-23 114.4 818 22.6
Hma1.2p1_0684F.1_g202990 Hydrangea macrophylla HOM05D000804 ORTHO05D005389 1.4e-22 113.2 559 23.8
PGR083G1621 Punica granatum HOM05D000804 ORTHO05D005389 1.4e-22 113.2 876 22.8
Cpa.g.sc73.84 Carica papaya HOM05D000804 ORTHO05D005389 2.5e-22 112.5 868 22.6
TWI32G1345 Tripterygium wilfordii HOM05D000804 ORTHO05D005389 2.5e-22 112.5 870 22.3
PSO063G5197 Papaver somniferum HOM05D000804 ORTHO05D005389 1.6e-21 109.8 909 22.8
Solyc01g081050.4 Solanum lycopersicum HOM05D000804 ORTHO05D005389 1.6e-21 109.8 841 22.7
TAR375G0260 Trochodendron aralioides HOM05D000804 ORTHO05D005389 1.6e-21 109.8 851 21.7
VMungo0331G0574 Vigna mungo HOM05D000804 ORTHO05D005389 6.0e-21 107.8 816 22.2
RcHm_v2.0_Chr1g0337141 Rosa chinensis HOM05D000804 ORTHO05D005389 7.9e-21 107.5 747 22.8
BcaC07g37646 Brassica carinata HOM05D000804 ORTHO05D005389 8.2e-18 97.4 469 24.1
Actinidia21598 Actinidia chinensis HOM05D000804 ORTHO05D005389 5.3e-17 94.7 488 25.8
Thecc.05G230500 Theobroma cacao HOM05D000804 ORTHO05D005389 2.6e-16 92.4 697 21.2
Lsat_1_v5_gn_1_84561 Lactuca sativa HOM05D000804 ORTHO05D005389 7.6e-16 90.9 861 21.6
Haze_15812 Corylus avellana HOM05D000804 ORTHO05D005389 2.2e-15 89.4 568 22.9
ATR0829G026 Amborella trichopoda HOM05D000804 ORTHO05D005389 3.8e-15 88.6 350 27.1
CDE12G0352 Ceratophyllum demersum HOM05D000804 ORTHO05D005389 8.5e-15 87.4 494 22.5
Nitab4.5_0000592g0230 Nicotiana tabacum HOM05D000804 ORTHO05D005389 7.2e-14 84.3 832 21.4
Rhsim01G0134900 Rhododendron simsii HOM05D000804 ORTHO05D005389 1.0e-12 80.5 689 21.9
Actinidia21597 Actinidia chinensis HOM05D000804 ORTHO05D005389 1.8e-12 79.7 115 37.4
CBR_g4474 Chara braunii HOM05D000804 ORTHO05D005389 8.7e-12 77.4 255 26.3
Ca_23827_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 9.7e-11 73.9 320 25.3
FvH4_7g07130 Fragaria vesca HOM05D000804 ORTHO05D005389 2.2e-10 72.8 454 22.5
SEGI_26274 Sequoiadendron giganteum HOM05D000804 ORTHO05D005389 2.8e-10 72.4 109 33.9
MCO05G727 Micromonas commoda HOM05D000804 ORTHO05D005389 1.1e-09 70.5 538 24.0
PRCOL_00005982 Prasinoderma coloniale HOM05D000258 ORTHO05D000153 1.1e-09 70.5 645 24.3
Cfa026359 Carpinus fangiana HOM05D000804 ORTHO05D005389 1.8e-09 69.7 606 22.4
Pp3c10_8470 Physcomitrium patens HOM05D000804 ORTHO05D005389 9.0e-09 67.4 503 21.7
BolC5t31685H Brassica oleracea HOM05D000169 ORTHO05D007693 1.5e-08 66.6 601 23.3
C05p29540 Brassica napus HOM05D000169 ORTHO05D007693 2.0e-08 66.2 601 23.3
TWI15G0677 Tripterygium wilfordii HOM05D000169 ORTHO05D007693 3.4e-08 65.5 606 21.6
HPP92_005382 Vanilla planifolia HOM05D000804 ORTHO05D005389 3.4e-08 65.5 154 29.9
Gohir.D08G199900 Gossypium hirsutum HOM05D000169 ORTHO05D004437 5.9e-08 64.7 193 29.0
Gorai.004G210700 Gossypium raimondii HOM05D000169 ORTHO05D004437 7.7e-08 64.3 193 29.0
Oeu024959.1 Olea europaea HOM05D000804 ORTHO05D005389 7.7e-08 64.3 557 20.3
Oeu024961.1 Olea europaea HOM05D000804 ORTHO05D005389 7.7e-08 64.3 337 24.9
Nitab4.5_0003594g0030 Nicotiana tabacum HOM05D000804 ORTHO05D005389 1.3e-07 63.5 145 34.5
arahy.Tifrunner.gnm1.ann1.T5Y52R Arachis hypogaea HOM05D000169 ORTHO05D007693 1.7e-07 63.2 585 20.7
HPP92_020856 Vanilla planifolia HOM05D000169 ORTHO05D004437 1.7e-07 63.2 210 25.7
Atru.chr9.2224 Acer truncatum HOM05D000169 ORTHO05D004437 2.2e-07 62.8 213 26.8
Cpa.g.sc74.15 Carica papaya HOM05D000169 ORTHO05D004437 2.2e-07 62.8 178 29.8
Dinv28432 Davidia involucrata HOM05D000169 ORTHO05D004437 2.2e-07 62.8 213 26.3
Potri.001G105900 Populus trichocarpa HOM05D000169 ORTHO05D004437 2.2e-07 62.8 211 25.6
TAR374G0096 Trochodendron aralioides HOM05D000169 ORTHO05D004437 2.2e-07 62.8 211 26.1
ATR0680G178 Amborella trichopoda HOM05D000169 ORTHO05D004437 2.9e-07 62.4 178 28.1
A09p35920 Brassica napus HOM05D000169 ORTHO05D007693 2.9e-07 62.4 607 22.4
SalBow4G0135 Salvia bowleyana HOM05D000169 ORTHO05D004437 2.9e-07 62.4 178 28.7
SalBow4G1348 Salvia bowleyana HOM05D000169 ORTHO05D004437 2.9e-07 62.4 178 28.7
SEGI_19305 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 2.9e-07 62.4 181 27.1
SEGI_29686 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 2.9e-07 62.4 181 27.1
arahy.Tifrunner.gnm1.ann1.D0AYNK Arachis hypogaea HOM05D000169 ORTHO05D007693 3.8e-07 62.0 606 21.0
BraA09t39117Z Brassica rapa HOM05D000169 ORTHO05D007693 3.8e-07 62.0 607 22.4
Lj1A998T45 Lonicera japonica HOM05D000169 ORTHO05D004437 5.0e-07 61.6 213 25.8
Gohir.A08G181200 Gossypium hirsutum HOM05D000169 ORTHO05D004437 6.5e-07 61.2 193 26.9
Atru.chr9.2225 Acer truncatum HOM05D000169 ORTHO05D004437 8.5e-07 60.8 100 37.0
CDE11G0733 Ceratophyllum demersum HOM05D000169 ORTHO05D004437 8.5e-07 60.8 193 25.9
Eucgr.E00577 Eucalyptus grandis HOM05D000169 ORTHO05D004437 8.5e-07 60.8 177 28.8
AL5G28500 Arabidopsis lyrata HOM05D000169 ORTHO05D004437 1.1e-06 60.5 190 25.3
Ciclev10004732m.g Citrus clementina HOM05D000169 ORTHO05D004437 1.1e-06 60.5 213 24.9
Lalb_Chr20g0120061 Lupinus albus HOM05D000169 ORTHO05D007693 1.1e-06 60.5 509 21.4
MCO07G286 Micromonas commoda HOM05D000804 ORTHO05D002625 1.1e-06 60.5 273 28.2
Peaxi162Scf00521g00213 Petunia axillaris HOM05D000356 ORTHO05D000265 1.1e-06 60.5 328 23.5
SEGI_37772 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 1.1e-06 60.5 170 26.5
SEGI_38524 Sequoiadendron giganteum HOM05D000169 ORTHO05D004437 1.1e-06 60.5 181 26.5
Ca_23822_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 1.4e-06 60.1 103 34.0
Sp5g13060 Schrenkiella parvula HOM05D000169 ORTHO05D004437 1.4e-06 60.1 190 25.3
Sed0004240 Sechium edule HOM05D000169 ORTHO05D004437 1.4e-06 60.1 174 25.3
AT3G48990 Arabidopsis thaliana HOM05D000169 ORTHO05D004437 1.9e-06 59.7 190 25.3
Glyma.11G198300 Glycine max HOM05D000169 ORTHO05D004437 1.9e-06 59.7 174 27.6
Nn6g33481 Nelumbo nucifera HOM05D000169 ORTHO05D004437 1.9e-06 59.7 214 25.7
TWI14G0725 Tripterygium wilfordii HOM05D000169 ORTHO05D004437 1.9e-06 59.7 176 26.7
EL10Ac3g05630 Beta vulgaris HOM05D000169 ORTHO05D004437 2.5e-06 59.3 185 27.0
DCAR_009369 Daucus carota HOM05D000169 ORTHO05D004437 2.5e-06 59.3 213 26.3
Duzib205G1239 Durio zibethinus HOM05D000169 ORTHO05D004437 2.5e-06 59.3 193 26.9
HanXRQChr09g0253691 Helianthus annuus HOM05D000169 ORTHO05D004437 2.5e-06 59.3 213 25.8
Pp3c24_4490 Physcomitrium patens HOM05D000169 ORTHO05D004437 2.5e-06 59.3 171 25.1
Sabra01G0080200 Salix brachista HOM05D000169 ORTHO05D004437 2.5e-06 59.3 211 24.2
Sc13g0008750 Simmondsia chinensis HOM05D000169 ORTHO05D004437 2.5e-06 59.3 175 28.6
BcaB01g00762 Brassica carinata HOM05D000169 ORTHO05D004437 3.2e-06 58.9 190 24.7
A06p18760 Brassica napus HOM05D000169 ORTHO05D004437 3.2e-06 58.9 190 24.7
ECA232G0402 Erigeron canadensis HOM05D000169 ORTHO05D004437 3.2e-06 58.9 213 25.8
Thhalv10010297m.g Eutrema salsugineum HOM05D000169 ORTHO05D004437 3.2e-06 58.9 190 25.3
RcHm_v2.0_Chr2g0102891 Rosa chinensis HOM05D000804 ORTHO05D005389 3.2e-06 58.9 130 31.5
VMungo0720G2642 Vigna mungo HOM05D000169 ORTHO05D004437 3.2e-06 58.9 191 25.7
Atru.chr1.447 Acer truncatum HOM05D000169 ORTHO05D004437 4.2e-06 58.5 178 28.7
BcaC07g39375 Brassica carinata HOM05D000169 ORTHO05D004437 4.2e-06 58.5 191 24.6
C08p23960 Brassica napus HOM05D000169 ORTHO05D004437 4.2e-06 58.5 191 24.6
BolC8t50020H Brassica oleracea HOM05D000169 ORTHO05D004437 4.2e-06 58.5 191 24.6
AUR62015970 Chenopodium quinoa HOM05D000169 ORTHO05D004437 4.2e-06 58.5 193 27.5
COL.COLO4_34442 Corchorus olitorius HOM05D000169 ORTHO05D004437 4.2e-06 58.5 193 26.4
MELO3C005663.2 Cucumis melo HOM05D000169 ORTHO05D004437 4.2e-06 58.5 177 26.6
Glyma.09G138100 Glycine max HOM05D000169 ORTHO05D004437 4.2e-06 58.5 193 25.9
MBI18_g19082_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004437 4.2e-06 58.5 167 26.9
Os04g0683700 Oryza sativa ssp. japonica HOM05D000169 ORTHO05D004437 4.2e-06 58.5 175 28.0
SEGI_25496 Sequoiadendron giganteum HOM05D000804 ORTHO05D005389 4.2e-06 58.5 214 25.7
Thecc.03G276900 Theobroma cacao HOM05D000169 ORTHO05D004437 4.2e-06 58.5 193 25.9
BraA06t24957Z Brassica rapa HOM05D000169 ORTHO05D004437 5.5e-06 58.2 190 24.7
CsaV3_5G002930 Cucumis sativus L. HOM05D000169 ORTHO05D004437 5.5e-06 58.2 177 26.6
Glyma.20G159300 Glycine max HOM05D000169 ORTHO05D004437 5.5e-06 58.2 193 26.4
Phvul.007G071000 Phaseolus vulgaris HOM05D000169 ORTHO05D004437 5.5e-06 58.2 191 25.7
Psat0s2062g0040 Pisum sativum HOM05D000169 ORTHO05D004437 5.5e-06 58.2 174 27.6
PGR042G3134 Punica granatum HOM05D000169 ORTHO05D004437 5.5e-06 58.2 178 27.0
TWI23G0509 Tripterygium wilfordii HOM05D000169 ORTHO05D004437 5.5e-06 58.2 224 25.0
Carub.0005s1516 Capsella rubella HOM05D000169 ORTHO05D004437 7.2e-06 57.8 190 24.7
CAN.G438.32 Capsicum annuum HOM05D000169 ORTHO05D004780 7.2e-06 57.8 142 28.9
MELO3C005498.2 Cucumis melo HOM05D000169 ORTHO05D004437 7.2e-06 57.8 178 25.3
Manes.14G025500 Manihot esculenta HOM05D000169 ORTHO05D004437 7.2e-06 57.8 176 28.4
Peaxi162Scf01969g00022 Petunia axillaris HOM05D000169 ORTHO05D004437 7.2e-06 57.8 216 24.5
VMungo0540G2085 Vigna mungo HOM05D000169 ORTHO05D004437 7.2e-06 57.8 175 26.3
PSO478G4025 Papaver somniferum HOM05D000169 ORTHO05D004437 9.4e-06 57.4 170 28.8
QL09p013995 Quercus lobata HOM05D000169 ORTHO05D004437 9.4e-06 57.4 193 26.4
QL12p033727 Quercus lobata HOM05D000169 ORTHO05D004437 9.4e-06 57.4 191 27.7
PGSC0003DMG400029915 Solanum tuberosum HOM05D000169 ORTHO05D004437 9.4e-06 57.4 216 25.0


User provided reference genes

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