Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 1.6e-254 882.5 510 100.0
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 7.8e-121 438.3 409 53.8
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.7e-120 437.2 405 54.6
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 3.3e-119 433.0 405 54.6
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 2.4e-114 416.8 400 53.0
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 1.2e-113 414.5 406 51.2
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 2.1e-113 413.7 398 52.3
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.0e-112 411.4 398 52.0
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 1.8e-112 410.6 404 50.5
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 2.3e-112 410.2 406 51.2
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 2.3e-112 410.2 407 51.4
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.9e-112 409.5 405 50.1
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.9e-112 409.5 407 49.9
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 3.9e-112 409.5 404 50.2
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 6.7e-112 408.7 409 51.3
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.1e-111 407.9 407 49.9
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 1.5e-111 407.5 408 50.5
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 2.5e-111 406.8 411 50.6
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 3.3e-111 406.4 404 51.0
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 3.3e-111 406.4 406 50.0
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 4.3e-111 406.0 409 50.9
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.3e-111 406.0 406 49.3
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.6e-111 405.6 406 49.5
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 5.6e-111 405.6 406 49.8
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 5.6e-111 405.6 406 50.2
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 9.6e-111 404.8 407 50.6
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 9.6e-111 404.8 406 49.0
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 1.3e-110 404.4 409 49.4
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 1.3e-110 404.4 407 50.1
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 1.6e-110 404.1 407 49.6
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 2.8e-110 403.3 404 50.2
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 6.2e-110 402.1 400 50.8
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 6.2e-110 402.1 406 49.0
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 8.1e-110 401.7 402 50.7
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 8.1e-110 401.7 406 50.5
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 8.1e-110 401.7 406 49.3
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 8.1e-110 401.7 400 50.5
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 1.1e-109 401.4 405 49.9
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 1.1e-109 401.4 407 49.9
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 1.1e-109 401.4 407 49.4
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 1.8e-109 400.6 400 50.5
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 2.4e-109 400.2 402 50.5
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 2.4e-109 400.2 402 50.5
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 2.4e-109 400.2 410 50.0
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 4.0e-109 399.4 400 49.5
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 4.0e-109 399.4 402 51.0
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 4.0e-109 399.4 407 50.1
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 5.3e-109 399.1 400 49.5
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 5.3e-109 399.1 409 50.1
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 5.3e-109 399.1 409 50.1
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 5.3e-109 399.1 406 48.3
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 5.3e-109 399.1 410 48.8
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 5.3e-109 399.1 404 50.0
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 6.9e-109 398.7 407 49.9
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 6.9e-109 398.7 407 50.1
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 6.9e-109 398.7 406 50.2
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 1.2e-108 397.9 408 48.8
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 2.0e-108 397.1 400 49.2
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 2.6e-108 396.7 406 49.5
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 2.6e-108 396.7 400 49.8
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 2.6e-108 396.7 400 50.2
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 3.4e-108 396.4 402 50.0
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 3.4e-108 396.4 407 50.4
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 4.5e-108 396.0 408 49.5
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 4.5e-108 396.0 408 49.5
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 4.5e-108 396.0 406 48.8
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 4.5e-108 396.0 406 48.8
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 5.8e-108 395.6 406 49.3
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 5.8e-108 395.6 406 49.3
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 5.8e-108 395.6 437 47.1
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 7.6e-108 395.2 407 49.1
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 1.3e-107 394.4 408 49.8
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.3e-107 394.4 412 49.3
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 1.3e-107 394.4 408 49.5
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 1.3e-107 394.4 400 50.0
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 2.2e-107 393.7 401 50.1
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 3.8e-107 392.9 406 49.3
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 4.9e-107 392.5 406 48.5
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 8.4e-107 391.7 362 54.4
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 8.4e-107 391.7 423 50.1
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 8.4e-107 391.7 407 47.9
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 1.1e-106 391.3 412 49.3
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 1.1e-106 391.3 411 49.1
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.4e-106 391.0 420 48.3
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.4e-106 391.0 420 48.1
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.4e-106 391.0 420 48.3
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 1.9e-106 390.6 413 49.2
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 1.9e-106 390.6 400 48.0
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 2.4e-106 390.2 412 49.3
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 2.4e-106 390.2 403 48.9
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 3.2e-106 389.8 407 48.4
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.2e-106 389.8 420 48.3
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.1e-106 388.7 403 49.6
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 9.3e-106 388.3 406 48.8
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 1.2e-105 387.9 410 47.8
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 2.1e-105 387.1 431 47.3
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.5e-105 386.3 406 49.0
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 3.5e-105 386.3 410 47.8
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 4.6e-105 386.0 405 47.9
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 6.0e-105 385.6 406 48.3
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 7.9e-105 385.2 420 47.4
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 1.0e-104 384.8 401 50.1
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 1.3e-104 384.4 410 47.8
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 1.8e-104 384.0 408 48.3
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.8e-104 384.0 401 48.9
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 1.8e-104 384.0 414 48.3
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 3.9e-104 382.9 436 45.9
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 3.9e-104 382.9 436 45.9
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 5.1e-104 382.5 405 47.7
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 6.7e-104 382.1 403 48.4
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 1.1e-103 381.3 407 48.6
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 2.5e-103 380.2 407 48.9
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 2.5e-103 380.2 407 48.4
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 3.3e-103 379.8 400 48.8
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 3.3e-103 379.8 434 45.6
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 3.3e-103 379.8 403 47.9
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 2.1e-102 377.1 403 47.9
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 3.7e-102 376.3 402 49.0
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.1e-101 374.8 450 45.3
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 3.1e-101 373.2 393 48.6
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 2.0e-100 370.5 417 46.8
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 4.5e-100 369.4 401 47.9
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 5.8e-100 369.0 402 48.3
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 3.8e-99 366.3 350 50.9
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 4.2e-98 362.8 398 46.2
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 4.6e-97 359.4 405 44.4
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 6.0e-97 359.0 466 44.2
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 1.0e-96 358.2 350 51.7
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 2.5e-95 353.6 408 46.8
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 5.7e-95 352.4 406 45.6
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 3.7e-94 349.7 509 40.9
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 1.7e-91 340.9 376 46.0
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 1.1e-90 338.2 447 41.8
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 3.2e-90 336.7 400 44.2
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 5.5e-90 335.9 419 44.6
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 9.4e-90 335.1 330 50.6
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 1.8e-85 320.9 306 52.3
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 2.4e-85 320.5 350 46.6
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 2.6e-84 317.0 442 41.6
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 1.2e-81 308.1 461 39.9
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.7e-81 307.0 297 50.8
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.1e-79 301.6 269 55.4
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 4.1e-77 293.1 299 50.2
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.3e-75 288.1 391 41.7
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 1.3e-75 288.1 411 40.1
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 2.5e-74 283.9 406 40.1
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 6.7e-72 275.8 285 51.2
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 5.5e-66 256.1 244 50.8
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 1.4e-64 251.5 245 51.4
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 4.7e-57 226.5 381 37.0
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 2.1e-49 201.1 457 31.5
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 4.1e-45 186.8 240 43.3
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 2.7e-44 184.1 245 42.4
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 3.8e-43 180.3 268 37.7
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 6.4e-38 162.9 358 28.2
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 3.0e-35 154.1 383 28.7
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 3.6e-33 147.1 158 48.7
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 2.7e-28 131.0 124 51.6
RcHm_v2.0_Chr1g0352651 Rosa chinensis HOM05D003871 ORTHO05D004621 1.7e-27 128.3 132 49.2
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 1.9e-26 124.8 346 28.9
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 1.6e-25 121.7 169 39.6
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-24 117.1 130 50.0
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 2.0e-23 114.8 102 56.9
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 1.3e-22 112.1 350 28.9
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 8.3e-22 109.4 91 56.0
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 1.9e-21 108.2 282 28.4
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 6.6e-19 99.8 99 51.5
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.1e-16 90.9 103 41.7
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.6e-15 87.8 103 39.8
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 9.9e-15 85.9 301 23.6
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 6.0e-12 76.6 372 22.6
BraA07t30175Z Brassica rapa HOM05D003871 ORTHO05D004621 6.9e-08 63.2 76 44.7
TAR375G0392 Trochodendron aralioides HOM05D003871 ORTHO05D004621 6.9e-08 63.2 80 45.0
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 1.5e-07 62.0 69 40.6
HPP92_007379 Vanilla planifolia HOM05D003871 ORTHO05D004621 3.4e-07 60.8 76 44.7
BcaC01g03724 Brassica carinata HOM05D003871 ORTHO05D039068 4.4e-07 60.5 83 38.6


User provided reference genes

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