Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 0.0e+00 2322.4 1239 100.0
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 0.0e+00 1142.1 1174 53.7
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1126.7 1214 52.7
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 1115.9 1219 51.3
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1109.0 1215 51.0
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 1108.6 1243 50.1
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1107.8 1222 50.7
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1107.8 1222 50.7
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 1105.5 1243 49.5
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1105.1 1169 52.6
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 1102.0 1248 49.8
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1101.3 1247 49.6
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1100.9 1163 52.5
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1100.5 1222 50.4
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1099.3 1243 49.7
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 1096.3 1243 49.6
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1094.7 1169 52.1
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1093.2 1173 52.1
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 1091.3 1232 50.0
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1091.3 1161 52.0
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1087.8 1274 49.0
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 0.0e+00 1087.0 1161 52.0
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 1087.0 1167 51.5
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 1086.6 1222 50.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1085.9 1222 50.0
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1084.3 1243 49.8
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1084.3 1221 50.5
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1083.9 1243 49.6
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 1080.9 1220 50.0
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1077.0 1168 51.3
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 8.5e-312 1074.7 1243 49.2
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 1.7e-311 1072.8 1219 49.7
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 1.7e-310 1069.7 1244 49.2
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 2.9e-310 1068.9 1168 51.3
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 2.9e-310 1068.9 1168 51.4
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 4.9e-310 1068.1 1203 51.4
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 5.4e-309 1064.7 1161 51.4
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.2e-308 1063.5 1196 50.1
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 2.1e-308 1062.8 1168 50.6
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 5.1e-307 1058.1 1167 50.6
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 6.6e-307 1057.7 1168 50.8
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.9e-306 1056.2 1290 47.8
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 4.3e-306 1055.0 1242 48.9
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 5.6e-306 1054.7 1215 49.6
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 7.3e-306 1054.3 1168 50.5
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 4.8e-305 1051.6 1215 49.1
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 4.0e-304 1048.5 1168 50.5
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 1.2e-303 1047.0 1168 50.5
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 2.2e-302 1042.7 1226 48.9
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 3.8e-302 1042.0 1239 48.7
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.8e-302 1042.0 1222 48.6
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 4.2e-301 1038.5 1220 48.6
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 7.1e-301 1037.7 1214 49.5
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 1.2e-300 1036.9 1124 51.5
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 2.1e-300 1036.2 1247 48.3
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.0e-299 1033.9 1216 48.3
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 3.9e-299 1031.9 1216 48.4
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 3.3e-298 1028.9 1168 50.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.3e-297 1026.9 1168 49.5
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 1.1e-296 1023.8 1244 47.5
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 1.4e-296 1023.5 1314 45.5
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 2.4e-296 1022.7 1213 48.6
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 3.1e-296 1022.3 1213 48.2
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 9.0e-296 1020.8 1243 47.6
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 4.5e-295 1018.5 1216 48.5
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 2.2e-294 1016.1 1168 49.7
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 9.3e-293 1010.7 1305 45.8
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 7.9e-292 1007.7 1168 49.4
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.0e-291 1007.3 1199 48.3
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 6.2e-289 998.0 1192 48.0
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 5.3e-288 995.0 1124 50.2
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 1.9e-285 986.5 1172 48.8
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 1.9e-285 986.5 1167 48.6
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 4.2e-285 985.3 1124 49.6
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 1.6e-284 983.4 1129 49.4
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.0e-283 980.7 1172 48.5
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 5.1e-283 978.4 1173 47.8
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 2.5e-282 976.1 1161 49.0
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.4e-277 960.3 1173 48.0
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 1.4e-277 960.3 1161 48.4
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.6e-276 956.8 1243 45.2
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 2.1e-276 956.4 1173 48.0
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 2.7e-276 956.1 1249 46.0
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 3.6e-276 955.7 1173 48.0
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 3.6e-276 955.7 1173 48.0
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 3.6e-276 955.7 1171 47.4
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 1.8e-275 953.4 1243 46.2
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 1.8e-275 953.4 1243 46.2
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 3.0e-275 952.6 1173 47.2
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 3.3e-274 949.1 1173 47.1
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 2.7e-268 929.5 1213 46.5
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 3.6e-268 929.1 1219 46.4
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 3.6e-268 929.1 1070 49.0
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 3.9e-267 925.6 1243 45.1
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.5e-266 923.7 1059 49.5
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.6e-266 922.9 1032 50.5
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 4.8e-265 918.7 1269 44.3
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 3.1e-264 916.0 1243 44.8
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 1.7e-262 910.2 1168 46.5
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 3.1e-256 889.4 1167 45.5
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 5.2e-251 872.1 1082 47.7
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.7e-246 857.1 894 51.9
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 1.7e-233 813.9 765 55.7
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.8e-224 783.9 765 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 1.2e-223 781.2 1241 40.9
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 3.2e-192 676.8 1068 41.3
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 2.7e-183 647.1 803 46.8
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.6e-159 568.2 896 40.5
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 5.1e-158 563.1 728 44.9
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 5.5e-144 516.5 454 59.5
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.2e-128 463.8 437 56.8
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 4.7e-127 460.3 769 40.2
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.9e-113 414.5 714 39.1
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 2.5e-104 384.8 361 57.9
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 7.5e-93 346.7 706 34.0
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 3.7e-92 344.4 591 40.4
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.9e-92 344.0 769 34.6
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 6.0e-90 337.0 327 56.6
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 8.4e-84 316.6 498 41.8
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 1.8e-65 255.8 543 36.5
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 6.9e-62 243.8 332 46.4
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.2e-58 233.0 270 49.3
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 4.5e-53 214.5 381 34.6
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 4.8e-47 194.5 234 47.4
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 4.5e-45 188.0 290 41.0
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 5.0e-44 184.5 230 48.3
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 5.0e-44 184.5 141 63.8
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 4.1e-38 164.9 198 48.0
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 2.6e-37 162.2 206 46.1
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 6.5e-36 157.5 144 59.7
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 1.6e-34 152.9 182 45.1
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 3.6e-34 151.8 315 31.1
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 7.9e-34 150.6 315 33.0
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.2e-31 140.6 181 44.8
Cre14.g615950 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 2.4e-30 139.0 300 33.0
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 1.6e-26 126.3 195 40.0
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 3.9e-25 121.7 367 28.3
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 6.7e-25 120.9 121 57.9
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 8.2e-23 114.0 182 36.8
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.7e-20 106.3 119 47.9
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 7.2e-19 100.9 137 43.8
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 7.2e-19 100.9 78 59.0
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 8.8e-17 94.0 125 44.8
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 2.2e-15 89.4 95 48.4
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 6.3e-15 87.8 95 47.4
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.1e-14 87.0 93 48.4
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.1e-14 87.0 93 48.4
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 2.4e-14 85.9 115 44.3
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 7.0e-14 84.3 71 57.7
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 7.0e-14 84.3 52 71.2
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 4.5e-13 81.6 105 49.5
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 2.7e-10 72.4 55 65.5
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 1.2e-08 67.0 77 46.8
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 9.8e-08 63.9 79 45.6


User provided reference genes

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