Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 5.4e-107 391.0 191 100.0
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 6.7e-41 171.4 185 45.9
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 5.3e-38 161.8 185 44.9
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.1e-34 149.8 193 40.4
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.1e-30 137.5 188 40.4
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 4.5e-29 132.1 184 39.7
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.3e-28 130.6 183 39.3
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.3e-28 130.6 183 38.3
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 2.2e-28 129.8 184 38.0
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 5.0e-28 128.6 183 37.7
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 8.5e-28 127.9 184 38.0
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 1.4e-27 127.1 183 36.1
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.9e-27 126.7 183 36.1
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.5e-27 126.3 183 38.3
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 3.2e-27 125.9 183 38.3
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 3.2e-27 125.9 184 37.5
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 4.2e-27 125.6 184 37.5
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.2e-27 125.6 184 37.5
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 4.2e-27 125.6 184 38.0
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 5.5e-27 125.2 183 38.3
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 5.5e-27 125.2 184 38.0
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 5.5e-27 125.2 183 38.3
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 5.5e-27 125.2 184 38.0
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.2e-27 124.8 186 37.6
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 7.2e-27 124.8 183 37.7
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 7.2e-27 124.8 183 37.7
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 9.4e-27 124.4 184 37.5
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.2e-26 124.0 183 36.1
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.6e-26 123.6 184 35.3
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 1.6e-26 123.6 190 37.9
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.6e-26 123.6 190 37.9
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.6e-26 123.6 184 37.5
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 1.6e-26 123.6 183 37.2
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 1.6e-26 123.6 183 36.1
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.6e-26 123.6 184 37.5
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 1.6e-26 123.6 183 37.2
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.6e-26 123.6 183 37.7
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.6e-26 123.6 187 39.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.6e-26 123.6 185 36.2
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.1e-26 123.2 183 37.7
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.1e-26 123.2 186 36.6
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.7e-26 122.9 183 36.1
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 2.7e-26 122.9 186 36.6
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 2.7e-26 122.9 188 37.2
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 2.7e-26 122.9 185 36.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 2.7e-26 122.9 185 36.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.6e-26 122.5 183 36.1
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 3.6e-26 122.5 183 36.1
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 4.7e-26 122.1 183 36.6
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 4.7e-26 122.1 183 37.2
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 4.7e-26 122.1 183 36.6
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 4.7e-26 122.1 183 37.7
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 6.1e-26 121.7 184 36.4
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 6.1e-26 121.7 184 35.9
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 7.9e-26 121.3 186 35.5
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 1.0e-25 120.9 194 36.6
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.0e-25 120.9 184 36.4
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.0e-25 120.9 185 36.8
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.4e-25 120.6 184 35.9
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 1.4e-25 120.6 185 35.7
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 1.4e-25 120.6 183 37.2
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.8e-25 120.2 185 35.1
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.8e-25 120.2 188 36.7
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.8e-25 120.2 183 37.2
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 2.3e-25 119.8 190 37.9
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.3e-25 119.8 186 36.6
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 3.0e-25 119.4 183 35.5
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.0e-25 119.4 184 37.5
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 3.0e-25 119.4 184 37.5
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 3.0e-25 119.4 187 36.4
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 3.0e-25 119.4 185 36.8
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 3.9e-25 119.0 179 35.8
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 3.9e-25 119.0 188 35.6
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 3.9e-25 119.0 190 36.3
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 3.9e-25 119.0 185 36.2
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.9e-25 119.0 191 36.6
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 5.2e-25 118.6 185 36.2
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 5.2e-25 118.6 184 37.5
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.2e-25 118.6 183 37.2
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.2e-25 118.6 183 37.2
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 5.2e-25 118.6 191 37.7
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 5.2e-25 118.6 184 37.0
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 5.2e-25 118.6 190 36.8
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 6.7e-25 118.2 184 36.4
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 6.7e-25 118.2 183 35.0
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 8.8e-25 117.9 185 35.7
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 8.8e-25 117.9 184 37.5
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.1e-24 117.5 185 35.7
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.1e-24 117.5 184 36.4
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 1.1e-24 117.5 186 34.9
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.5e-24 117.1 177 34.5
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 2.0e-24 116.7 185 35.1
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 2.0e-24 116.7 189 34.9
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 2.0e-24 116.7 183 36.6
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.3e-24 115.9 183 36.6
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 3.3e-24 115.9 184 34.2
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 3.3e-24 115.9 176 35.8
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 4.4e-24 115.5 185 34.6
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 4.4e-24 115.5 185 34.6
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.4e-24 115.5 185 34.6
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 4.4e-24 115.5 185 34.6
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 4.4e-24 115.5 185 34.6
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 4.4e-24 115.5 185 35.1
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.4e-24 115.5 177 33.9
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 4.4e-24 115.5 184 35.3
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 5.7e-24 115.2 185 35.1
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 5.7e-24 115.2 185 35.7
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 7.4e-24 114.8 185 36.2
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 7.4e-24 114.8 183 34.4
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 9.7e-24 114.4 185 34.1
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.7e-23 113.6 185 34.1
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.7e-23 113.6 185 34.1
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.7e-23 113.6 185 34.1
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.8e-23 112.8 186 34.9
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 3.7e-23 112.5 168 36.9
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.2e-21 107.5 184 34.8
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.3e-20 104.0 193 31.1
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 8.5e-20 101.3 148 37.2
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 8.5e-20 101.3 156 34.6
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.2e-19 98.2 193 30.6
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.2e-18 97.4 147 37.4
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 4.7e-18 95.5 165 37.0
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.0e-17 94.4 180 30.6
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 1.3e-15 87.4 150 35.3
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.8e-15 86.3 147 38.8
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 3.5e-13 79.3 140 35.7
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 5.9e-13 78.6 181 33.1
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 2.2e-12 76.6 180 33.9
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.3e-09 66.6 109 33.9
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 7.5e-08 61.6 91 31.9
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 3.1e-06 56.2 101 34.7


User provided reference genes

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