Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-261 906.0 436 100.0
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.3e-104 382.9 403 47.4
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.1e-98 362.1 407 45.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.9e-91 340.5 372 43.8
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.2e-91 339.3 340 47.1
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.0e-89 333.2 419 40.1
PRCOL_00003912 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.8e-87 326.6 457 40.5
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 8.9e-81 305.1 345 44.6
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-79 300.4 427 37.7
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-74 284.6 395 41.0
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.6e-74 283.1 341 44.3
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 6.8e-73 278.9 366 41.5
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.6e-50 203.4 345 37.7
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.5e-45 186.8 343 35.0
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.3e-44 184.9 377 34.0
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.7e-44 184.5 364 33.5
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.9e-38 164.5 350 32.0
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.7e-36 155.6 354 30.5
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.9e-35 154.5 341 33.1
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.3e-35 153.3 332 29.5
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 8.1e-34 149.1 304 30.6
CBR_g50631 Chara braunii HOM05D008676 ORTHO05D010936 1.4e-33 148.3 298 32.9
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.0e-33 146.7 344 30.2
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 7.6e-32 142.5 378 25.9
Cre01.g050451 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-31 139.0 418 27.3
CBR_g12467 Chara braunii HOM05D008676 ORTHO05D010936 1.7e-23 114.8 549 22.4
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.4e-22 111.7 330 25.2
Cre13.g591700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.0e-20 104.0 387 26.1
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.9e-20 103.6 225 29.3
PRCOL_00002565 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.3e-19 100.1 254 29.1
MCO15G671 Micromonas commoda HOM05D008676 ORTHO05D010936 3.7e-18 97.1 458 26.0
MCO15G046 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-16 92.0 180 30.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.6e-16 90.9 298 27.2
MCO13G127 Micromonas commoda HOM05D008676 ORTHO05D048976 3.4e-16 90.5 317 27.1
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 1.0e-15 89.0 312 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.3e-15 88.6 286 28.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 1.3e-15 88.6 308 26.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 1.3e-15 88.6 330 24.8
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 6.5e-15 86.3 286 25.5
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 8.4e-15 85.9 330 25.5
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 1.1e-14 85.5 308 25.6
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 1.9e-14 84.7 313 25.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 1.9e-14 84.7 325 25.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 2.5e-14 84.3 300 25.3
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 3.2e-14 84.0 294 25.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 4.2e-14 83.6 289 25.6
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 4.2e-14 83.6 312 25.3
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 5.5e-14 83.2 300 25.0
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 5.5e-14 83.2 308 25.3
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 7.2e-14 82.8 330 23.9
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 9.3e-14 82.4 312 23.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 9.3e-14 82.4 308 25.0
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 9.3e-14 82.4 346 24.0
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.6e-13 81.6 312 24.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.6e-13 81.6 310 25.8
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 1.6e-13 81.6 308 25.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 1.6e-13 81.6 330 25.5
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 2.1e-13 81.3 297 25.3
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 2.1e-13 81.3 289 26.3
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.7e-13 80.9 292 24.7
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.7e-13 80.9 292 24.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 2.7e-13 80.9 289 24.9
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 2.7e-13 80.9 316 25.6
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 2.7e-13 80.9 330 22.4
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 3.5e-13 80.5 289 24.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 3.5e-13 80.5 288 24.7
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 3.5e-13 80.5 304 24.7
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 3.5e-13 80.5 312 24.7
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 3.5e-13 80.5 289 24.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 4.6e-13 80.1 301 25.6
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 6.1e-13 79.7 298 24.8
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 6.1e-13 79.7 285 25.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 7.9e-13 79.3 298 24.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 7.9e-13 79.3 298 24.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 7.9e-13 79.3 298 24.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 7.9e-13 79.3 308 25.0
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 7.9e-13 79.3 289 24.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 1.0e-12 79.0 278 24.8
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 1.0e-12 79.0 310 24.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.0e-12 79.0 328 24.7
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 1.3e-12 78.6 309 23.9
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 1.3e-12 78.6 322 25.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-12 78.6 315 23.5
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 1.3e-12 78.6 277 25.3
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 1.3e-12 78.6 309 23.9
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 1.8e-12 78.2 297 25.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.8e-12 78.2 308 24.0
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.8e-12 78.2 308 24.0
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 1.8e-12 78.2 306 25.8
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 2.3e-12 77.8 273 25.6
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 2.3e-12 77.8 330 23.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 2.3e-12 77.8 306 25.2
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 2.3e-12 77.8 308 25.3
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 3.0e-12 77.4 277 25.6
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 3.9e-12 77.0 308 23.1
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 3.9e-12 77.0 315 24.1
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.9e-12 77.0 315 24.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 5.1e-12 76.6 288 25.0
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 5.1e-12 76.6 309 23.6
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 6.7e-12 76.3 306 24.8
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 6.7e-12 76.3 234 26.1
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 8.7e-12 75.9 284 25.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 8.7e-12 75.9 297 23.9
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 1.1e-11 75.5 309 23.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 1.1e-11 75.5 288 25.7
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.1e-11 75.5 331 24.8
Cre12.g547700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-11 75.5 204 27.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 1.5e-11 75.1 309 23.3
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 1.5e-11 75.1 301 22.6
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 1.5e-11 75.1 81 45.7
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 1.5e-11 75.1 279 23.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 1.5e-11 75.1 297 24.6
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 1.5e-11 75.1 289 24.2
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 1.5e-11 75.1 308 24.7
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 1.9e-11 74.7 285 22.8
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 1.9e-11 74.7 288 22.9
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 1.9e-11 74.7 277 23.5
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 2.5e-11 74.3 297 22.6
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 2.5e-11 74.3 300 24.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 2.5e-11 74.3 277 24.9
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 3.3e-11 73.9 297 24.6
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 3.3e-11 73.9 308 24.0
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 4.3e-11 73.6 297 22.9
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 4.3e-11 73.6 231 26.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 4.3e-11 73.6 286 24.1
PRCOL_00000500 Prasinoderma coloniale HOM05D008676 ORTHO05D048976 5.7e-11 73.2 264 25.0
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 5.7e-11 73.2 288 24.7
PRCOL_00000498 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 7.4e-11 72.8 384 24.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 9.7e-11 72.4 301 22.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.6e-10 71.6 331 24.5
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.2e-10 71.2 157 30.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 2.2e-10 71.2 308 24.4
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 2.8e-10 70.9 308 24.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 2.8e-10 70.9 288 23.6
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 3.7e-10 70.5 308 23.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.7e-10 70.5 308 23.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 4.8e-10 70.1 308 24.4
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 1.1e-09 68.9 307 26.1
PRCOL_00006674 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.1e-09 67.4 200 24.0
Cre04.g212550 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.1e-09 67.0 170 28.2
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.2e-08 65.5 200 26.5
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-08 65.5 116 31.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 1.2e-08 65.5 306 23.9
CBR_g36369 Chara braunii HOM05D008676 ORTHO05D010936 4.5e-08 63.5 56 46.4
Cre09.g394769 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.5e-08 63.5 363 22.0
AagrBONN_evm.TU.Sc2ySwM_368.1638 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.0e-07 62.4 136 29.4
AagrBONN_evm.TU.Sc2ySwM_368.1640 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.0e-07 62.4 136 29.4
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.8e-07 60.5 200 26.0
PRCOL_00006851 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.8e-07 60.5 170 26.5
CBR_g24179 Chara braunii HOM05D008676 ORTHO05D010936 6.5e-07 59.7 181 28.2


User provided reference genes

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