Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G130 Micromonas commoda HOM05D000082 ORTHO05D003202 1.8e-226 788.9 378 100.0
Cre10.g422050 Chlamydomonas reinhardtii HOM05D000082 ORTHO05D000038 1.1e-07 62.0 52 44.2
Os09g0434200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D007743 1.5e-07 61.6 68 39.7
CAN.G867.4 Capsicum annuum HOM05D000082 ORTHO05D009107 3.3e-07 60.5 57 43.9
Oeu035161.1 Olea europaea HOM05D000082 ORTHO05D009107 3.3e-07 60.5 78 37.2
Zm00001eb099970 Zea mays HOM05D000082 ORTHO05D007743 3.3e-07 60.5 63 42.9
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 4.3e-07 60.1 70 44.3
TAR623G1174 Trochodendron aralioides HOM05D000082 ORTHO05D009107 5.6e-07 59.7 85 36.5
arahy.Tifrunner.gnm1.ann1.9Z4RH8 Arachis hypogaea HOM05D000082 ORTHO05D007743 7.3e-07 59.3 63 39.7
arahy.Tifrunner.gnm1.ann1.GHB8SH Arachis hypogaea HOM05D000082 ORTHO05D007743 7.3e-07 59.3 63 39.7
Gohir.D09G149900 Gossypium hirsutum HOM05D000082 ORTHO05D001639 7.3e-07 59.3 67 37.3
Gorai.006G171100 Gossypium raimondii HOM05D000082 ORTHO05D001639 7.3e-07 59.3 67 37.3
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 9.6e-07 58.9 65 43.1
Sabra02G0067200 Salix brachista HOM05D000082 ORTHO05D000038 9.6e-07 58.9 74 37.8
CAN.G855.41 Capsicum annuum HOM05D000082 ORTHO05D000038 1.3e-06 58.5 117 33.3
Ciclev10012410m.g Citrus clementina HOM05D000082 ORTHO05D009107 1.3e-06 58.5 121 32.2
CSS0022191 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D001639 1.6e-06 58.2 63 36.5
Hma1.2p1_0936F.1_g238940 Hydrangea macrophylla HOM05D000082 ORTHO05D001639 1.6e-06 58.2 55 41.8
Potri.002G085800 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.6e-06 58.2 72 37.5
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 2.1e-06 57.8 78 37.2
BcaB04g17230 Brassica carinata HOM05D000082 ORTHO05D000038 2.1e-06 57.8 114 34.2
Ca_13579_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 2.1e-06 57.8 60 38.3
MD08G1045000 Malus domestica HOM05D000082 ORTHO05D007743 2.1e-06 57.8 63 39.7
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 2.1e-06 57.8 63 38.1
HPP92_018139 Vanilla planifolia HOM05D000082 ORTHO05D001639 2.1e-06 57.8 56 42.9
Gohir.A09G154200 Gossypium hirsutum HOM05D000082 ORTHO05D001639 2.8e-06 57.4 65 36.9
MBI13_g01682_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D007743 2.8e-06 57.4 63 38.1
Pp3c2_5960 Physcomitrium patens HOM05D000082 ORTHO05D007743 2.8e-06 57.4 68 36.8
Potri.019G086601 Populus trichocarpa HOM05D000082 ORTHO05D000038 2.8e-06 57.4 54 44.4
Solyc10g084430.2 Solanum lycopersicum HOM05D000082 ORTHO05D009107 2.8e-06 57.4 56 42.9
TPR.G38904 Trifolium pratense HOM05D000082 ORTHO05D007743 2.8e-06 57.4 63 36.5
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 2.8e-06 57.4 64 43.8
A03p41490 Brassica napus HOM05D000082 ORTHO05D000038 3.6e-06 57.0 65 38.5
BraA03t13303Z Brassica rapa HOM05D000082 ORTHO05D000038 3.6e-06 57.0 65 38.5
Cc08_g07820 Coffea canephora HOM05D000082 ORTHO05D007743 3.6e-06 57.0 75 34.7
Lj7C205T1 Lonicera japonica HOM05D000082 ORTHO05D007743 3.6e-06 57.0 68 35.3
MD08G1045700 Malus domestica HOM05D000082 ORTHO05D007743 3.6e-06 57.0 63 39.7
Manes.16G088000 Manihot esculenta HOM05D000082 ORTHO05D007743 3.6e-06 57.0 71 33.8
Nitab4.5_0001926g0020 Nicotiana tabacum HOM05D000082 ORTHO05D000038 3.6e-06 57.0 77 33.8
Phvul.001G043900 Phaseolus vulgaris HOM05D000082 ORTHO05D007743 3.6e-06 57.0 68 33.8
Sabra16G0090300 Salix brachista HOM05D000082 ORTHO05D009107 3.6e-06 57.0 60 41.7
SEGI_35365 Sequoiadendron giganteum HOM05D000082 ORTHO05D007743 3.6e-06 57.0 71 36.6
ATR0099G078 Amborella trichopoda HOM05D000082 ORTHO05D007743 4.8e-06 56.6 63 38.1
BcaB04g20675 Brassica carinata HOM05D000082 ORTHO05D000038 4.8e-06 56.6 55 41.8
CSS0002434 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D009107 4.8e-06 56.6 60 43.3
CSS0022280 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 4.8e-06 56.6 56 41.1
Haze_18377 Corylus avellana HOM05D000082 ORTHO05D000038 4.8e-06 56.6 78 33.3
Eucgr.C03179 Eucalyptus grandis HOM05D000082 ORTHO05D007743 4.8e-06 56.6 63 36.5
Gohir.A04G083500 Gossypium hirsutum HOM05D000082 ORTHO05D001639 4.8e-06 56.6 65 36.9
Gohir.D04G122200 Gossypium hirsutum HOM05D000082 ORTHO05D001639 4.8e-06 56.6 65 36.9
Gorai.012G105100 Gossypium raimondii HOM05D000082 ORTHO05D001639 4.8e-06 56.6 65 36.9
HanXRQChr12g0380161 Helianthus annuus HOM05D000082 ORTHO05D000038 4.8e-06 56.6 85 34.1
Potri.006G216200 Populus trichocarpa HOM05D000082 ORTHO05D009107 4.8e-06 56.6 74 39.2
Sabra19G0097000 Salix brachista HOM05D000082 ORTHO05D000038 4.8e-06 56.6 54 44.4
SEGI_00059 Sequoiadendron giganteum HOM05D000082 ORTHO05D000038 4.8e-06 56.6 70 31.4
Thecc.05G036100 Theobroma cacao HOM05D000082 ORTHO05D001639 4.8e-06 56.6 65 35.4
VMungo0647G2039 Vigna mungo HOM05D000082 ORTHO05D007743 4.8e-06 56.6 68 33.8
Cpa.g.sc36.37 Carica papaya HOM05D000082 ORTHO05D000038 6.2e-06 56.2 84 36.9
Cfa017843 Carpinus fangiana HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 36.5
CiPaw.06G027400 Carya illinoinensis HOM05D000082 ORTHO05D000038 6.2e-06 56.2 59 37.3
CiPaw.09G185100 Carya illinoinensis HOM05D000082 ORTHO05D009107 6.2e-06 56.2 81 35.8
Cre13.g580750 Chlamydomonas reinhardtii HOM05D000082 ORTHO05D000038 6.2e-06 56.2 70 37.1
COL.COLO4_14768 Corchorus olitorius HOM05D000082 ORTHO05D001639 6.2e-06 56.2 65 35.4
Duzib106G0013 Durio zibethinus HOM05D000082 ORTHO05D001639 6.2e-06 56.2 65 35.4
FvH4_2g37060 Fragaria vesca HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 36.5
Gohir.D06G081000 Gossypium hirsutum HOM05D000082 ORTHO05D007743 6.2e-06 56.2 75 36.0
Gorai.010G094400 Gossypium raimondii HOM05D000082 ORTHO05D007743 6.2e-06 56.2 75 36.0
Lj5g0022807 Lotus japonicus HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 36.5
Lalb_Chr24g0393731 Lupinus albus HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 36.5
MBI03_g36293_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 6.2e-06 56.2 75 37.3
MD15G1046800 Malus domestica HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 38.1
Medtr1g014710 Medicago truncatula HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 36.5
Peaxi162Scf00597g00828 Petunia axillaris HOM05D000082 ORTHO05D009107 6.2e-06 56.2 65 41.5
Psat6g024320 Pisum sativum HOM05D000082 ORTHO05D007743 6.2e-06 56.2 63 36.5
Potri.016G082500 Populus trichocarpa HOM05D000082 ORTHO05D009107 6.2e-06 56.2 60 41.7
Sc25g0004450 Simmondsia chinensis HOM05D000082 ORTHO05D007743 6.2e-06 56.2 80 30.0
Sopen10g033870 Solanum pennellii HOM05D000082 ORTHO05D009107 6.2e-06 56.2 56 41.1
PGSC0003DMG400003678 Solanum tuberosum HOM05D000459 ORTHO05D006763 6.2e-06 56.2 87 33.3
ATR1127G161 Amborella trichopoda HOM05D000082 ORTHO05D000038 8.1e-06 55.8 65 38.5
AagrBONN_evm.TU.Sc2ySwM_344.4009 Anthoceros agrestis HOM05D000082 ORTHO05D007743 8.1e-06 55.8 87 37.9
BcaB04g19072 Brassica carinata HOM05D000082 ORTHO05D000038 8.1e-06 55.8 62 38.7
BcaC01g03594 Brassica carinata HOM05D000082 ORTHO05D000038 8.1e-06 55.8 62 38.7
C03p50800 Brassica napus HOM05D000082 ORTHO05D000038 8.1e-06 55.8 62 38.7
BolC3t17365H Brassica oleracea HOM05D000082 ORTHO05D000038 8.1e-06 55.8 62 38.7
CDE06G2470 Ceratophyllum demersum HOM05D000082 ORTHO05D007743 8.1e-06 55.8 80 31.2
Haze_18365 Corylus avellana HOM05D000082 ORTHO05D007743 8.1e-06 55.8 63 36.5
Glyma.17G220500 Glycine max HOM05D000082 ORTHO05D007743 8.1e-06 55.8 63 36.5
Hma1.2p1_0111F.1_g053540 Hydrangea macrophylla HOM05D000082 ORTHO05D009107 8.1e-06 55.8 60 41.7
Hma1.2p1_0920F.1_g236580 Hydrangea macrophylla HOM05D000082 ORTHO05D007743 8.1e-06 55.8 80 32.5
Lj1g0000980 Lotus japonicus HOM05D000082 ORTHO05D000038 8.1e-06 55.8 58 37.9
Lalb_Chr11g0065801 Lupinus albus HOM05D000082 ORTHO05D000038 8.1e-06 55.8 58 36.2
Lalb_Chr19g0125231 Lupinus albus HOM05D000082 ORTHO05D001639 8.1e-06 55.8 52 44.2
Nitab4.5_0007103g0010 Nicotiana tabacum HOM05D000082 ORTHO05D009107 8.1e-06 55.8 58 39.7
Nitab4.5_0009154g0010 Nicotiana tabacum HOM05D000082 ORTHO05D007743 8.1e-06 55.8 75 34.7
Nitab4.5_0015655g0010 Nicotiana tabacum HOM05D000082 ORTHO05D007743 8.1e-06 55.8 75 34.7
PSO421G0433 Papaver somniferum HOM05D000082 ORTHO05D007743 8.1e-06 55.8 58 41.4
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 8.1e-06 55.8 60 43.3
QL07p030175 Quercus lobata HOM05D000082 ORTHO05D001639 8.1e-06 55.8 64 35.9
QL07p030854 Quercus lobata HOM05D000082 ORTHO05D001639 8.1e-06 55.8 64 35.9
Solyc09g007060.2 Solanum lycopersicum HOM05D000082 ORTHO05D009107 8.1e-06 55.8 83 36.1
Sopen09g001920 Solanum pennellii HOM05D000082 ORTHO05D009107 8.1e-06 55.8 83 36.1
THA.LOC104826993 Tarenaya hassleriana HOM05D000082 ORTHO05D009107 8.1e-06 55.8 51 43.1
Thecc.09G066800 Theobroma cacao HOM05D000082 ORTHO05D007743 8.1e-06 55.8 75 36.0


User provided reference genes

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