Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 3.9e-122 441.4 217 100.0
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 2.8e-67 259.2 215 59.1
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.5e-65 253.4 215 57.2
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.5e-60 236.9 215 55.3
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 5.2e-58 228.4 204 53.4
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.5e-57 226.9 212 53.8
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.5e-57 226.9 212 53.8
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 8.4e-56 221.1 213 51.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.1e-55 220.7 215 50.2
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 1.4e-55 220.3 212 52.8
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.9e-55 219.9 212 52.4
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 1.9e-55 219.9 214 50.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.2e-55 219.2 215 48.4
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 4.2e-55 218.8 212 50.5
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.2e-55 218.8 212 52.4
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 5.4e-55 218.4 212 50.0
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 9.3e-55 217.6 214 50.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 9.3e-55 217.6 214 49.1
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.2e-54 217.2 213 51.2
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.6e-54 216.9 204 54.4
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.6e-54 216.9 212 51.4
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.1e-54 216.5 217 50.7
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.7e-54 216.1 213 50.7
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.7e-54 216.1 212 51.9
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.7e-54 216.1 212 51.9
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.7e-54 216.1 212 49.5
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.5e-54 215.7 217 50.7
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 3.5e-54 215.7 214 50.9
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 3.5e-54 215.7 213 49.3
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 3.5e-54 215.7 213 50.2
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 3.5e-54 215.7 213 50.2
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 4.6e-54 215.3 213 51.2
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 4.6e-54 215.3 212 52.4
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 4.6e-54 215.3 212 50.9
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.6e-54 215.3 213 51.6
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 4.6e-54 215.3 213 50.7
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 6.0e-54 214.9 212 50.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 6.0e-54 214.9 212 51.4
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.0e-53 214.2 217 47.9
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.3e-53 213.8 212 48.1
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.3e-53 213.8 213 51.2
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-53 213.8 212 50.9
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.3e-53 213.8 214 49.1
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.7e-53 213.4 214 50.0
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 2.3e-53 213.0 214 49.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.3e-53 213.0 217 50.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.0e-53 212.6 212 50.5
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 3.9e-53 212.2 215 49.8
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 3.9e-53 212.2 215 49.8
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 3.9e-53 212.2 214 48.1
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 6.6e-53 211.5 214 50.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 8.7e-53 211.1 212 48.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.1e-52 210.7 212 50.0
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.1e-52 210.7 212 49.1
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.5e-52 210.3 212 48.6
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.5e-52 210.3 212 48.6
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.9e-52 209.9 215 47.4
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.9e-52 209.9 212 49.5
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.5e-52 209.5 214 49.5
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 5.6e-52 208.4 212 49.5
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 5.6e-52 208.4 212 47.6
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 5.6e-52 208.4 212 47.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 7.3e-52 208.0 212 48.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 7.3e-52 208.0 201 48.8
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 7.3e-52 208.0 217 46.5
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 7.3e-52 208.0 212 49.1
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 7.3e-52 208.0 212 48.1
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 9.6e-52 207.6 206 51.5
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.3e-51 207.2 212 48.1
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.3e-51 207.2 214 49.5
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.3e-51 207.2 212 49.1
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.3e-51 207.2 212 48.1
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 1.6e-51 206.8 212 49.5
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.6e-51 206.8 217 45.6
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.6e-51 206.8 213 45.5
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 2.8e-51 206.1 213 47.9
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.8e-51 206.1 208 49.5
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 3.6e-51 205.7 212 49.1
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.6e-51 205.7 213 46.5
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 3.6e-51 205.7 212 48.1
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 6.2e-51 204.9 214 48.1
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 8.1e-51 204.5 212 46.7
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 8.1e-51 204.5 212 46.7
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 8.1e-51 204.5 212 49.5
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 8.1e-51 204.5 212 49.5
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.1e-50 204.1 212 49.5
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.4e-50 203.8 212 49.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.8e-50 203.4 208 48.1
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 1.8e-50 203.4 216 47.2
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.8e-50 203.4 212 49.1
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.4e-50 203.0 215 47.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 3.1e-50 202.6 212 46.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 3.1e-50 202.6 212 46.2
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 6.9e-50 201.4 239 44.4
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 6.9e-50 201.4 212 47.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.0e-50 201.1 212 48.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 9.0e-50 201.1 215 46.5
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.0e-49 199.9 215 47.0
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 2.0e-49 199.9 212 47.6
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 3.4e-49 199.1 212 48.1
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.5e-49 198.7 212 47.6
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.1e-47 194.1 214 46.3
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.4e-47 193.7 212 46.7
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.4e-47 193.7 193 48.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 3.2e-47 192.6 198 47.5
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 4.2e-47 192.2 212 47.2
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 2.1e-46 189.9 174 52.9
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 4.6e-46 188.7 201 48.8
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.0e-45 186.0 212 42.9
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 8.7e-45 184.5 212 42.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.5e-44 183.7 212 42.9
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.9e-44 183.3 278 38.5
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 5.6e-44 181.8 174 52.3
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.1e-42 177.6 174 52.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 8.4e-40 167.9 195 49.2
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 1.4e-39 167.2 308 33.4
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.9e-29 132.5 109 58.7
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 1.6e-27 127.1 121 52.9
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.0e-25 120.2 121 50.4
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 7.4e-20 101.7 91 52.7
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.9e-17 92.0 174 33.3
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.3e-13 80.1 163 28.8
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 5.1e-13 79.0 183 27.3
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.5e-12 77.4 127 36.2
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.0e-12 77.0 183 26.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 2.0e-12 77.0 203 26.1
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.0e-12 77.0 166 28.9
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.6e-12 76.6 183 26.8
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.3e-12 76.3 163 28.8
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 3.3e-12 76.3 163 30.1
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.3e-12 76.3 163 28.2
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.3e-12 76.3 164 26.8
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 5.7e-12 75.5 163 28.2
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 5.7e-12 75.5 161 29.2
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 7.4e-12 75.1 163 29.4
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.3e-11 74.3 83 43.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 1.7e-11 73.9 161 28.6
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.7e-11 73.9 147 29.9
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 3.7e-11 72.8 163 28.2
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 3.7e-11 72.8 159 28.3
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 3.7e-11 72.8 123 31.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.7e-11 72.8 159 28.3
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 6.3e-11 72.0 164 28.0
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 8.2e-11 71.6 83 45.8
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 1.1e-10 71.2 159 28.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.1e-10 71.2 159 28.3
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.1e-10 71.2 161 26.7
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.1e-10 71.2 172 27.9
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.4e-10 70.9 163 26.4
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.4e-10 70.9 162 30.2
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.4e-10 70.9 159 27.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.4e-10 70.1 164 26.2
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.4e-10 70.1 159 27.0
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.1e-10 69.7 163 28.8
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.1e-10 69.3 145 29.0
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.1e-10 69.3 145 29.0
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 5.3e-10 68.9 163 27.0
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.9e-10 68.6 150 31.3
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.9e-10 68.6 165 26.7
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 6.9e-10 68.6 161 28.0
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.5e-09 67.4 139 25.9
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.5e-09 67.4 209 24.9
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.6e-09 66.6 147 28.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.6e-09 66.6 147 27.9
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 2.6e-09 66.6 164 25.6
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 3.4e-09 66.2 137 27.7
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 4.5e-09 65.9 80 41.2
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.7e-08 63.9 115 28.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 2.9e-08 63.2 119 30.3
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.0e-08 62.4 61 47.5
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.0e-08 62.4 61 47.5
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 8.5e-08 61.6 112 31.2
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.9e-07 60.5 144 27.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 5.5e-07 58.9 142 28.2
Pp3c1_15860 Physcomitrium patens HOM05D006248 ORTHO05D312268 5.5e-07 58.9 34 76.5
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 5.5e-07 58.9 97 29.9
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.2e-06 57.8 112 28.6


User provided reference genes

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