Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.8e-75 285.8 145 100.0
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 2.2e-15 86.3 120 35.8
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 5.3e-14 81.6 118 37.3
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.2e-13 80.5 119 37.8
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 2.0e-13 79.7 116 37.9
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 3.4e-13 79.0 131 33.6
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 3.4e-13 79.0 116 36.2
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 4.5e-13 78.6 116 37.1
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 5.9e-13 78.2 116 37.1
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 7.7e-13 77.8 116 37.1
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 7.7e-13 77.8 116 36.2
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.0e-12 77.4 116 37.9
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.0e-12 77.4 116 37.1
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.0e-12 77.4 116 36.2
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.0e-12 77.4 116 35.3
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.3e-12 77.0 113 37.2
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.3e-12 77.0 118 38.1
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 1.3e-12 77.0 118 35.6
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 1.7e-12 76.6 113 37.2
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.7e-12 76.6 116 36.2
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 2.2e-12 76.3 116 37.1
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.2e-12 76.3 116 36.2
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.2e-12 76.3 116 36.2
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 2.9e-12 75.9 118 38.1
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 2.9e-12 75.9 118 38.1
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 2.9e-12 75.9 118 38.1
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 2.9e-12 75.9 118 38.1
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.9e-12 75.9 116 37.1
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 2.9e-12 75.9 116 34.5
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.9e-12 75.9 123 34.1
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 3.8e-12 75.5 118 37.3
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 3.8e-12 75.5 116 35.3
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 3.8e-12 75.5 121 34.7
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 5.0e-12 75.1 113 36.3
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.0e-12 75.1 116 35.3
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 5.0e-12 75.1 118 36.4
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 5.0e-12 75.1 116 36.2
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 5.0e-12 75.1 123 36.6
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 5.0e-12 75.1 119 36.1
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 5.0e-12 75.1 116 37.1
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 6.5e-12 74.7 116 33.6
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 6.5e-12 74.7 116 37.1
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 6.5e-12 74.7 124 37.1
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 6.5e-12 74.7 116 35.3
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 6.5e-12 74.7 123 34.1
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 6.5e-12 74.7 116 37.1
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 8.5e-12 74.3 118 37.3
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 34.5
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.1e-11 73.9 121 34.7
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.1e-11 73.9 124 32.3
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 35.3
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 36.2
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 35.3
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 35.3
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 37.1
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 1.1e-11 73.9 120 38.3
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 33.6
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.1e-11 73.9 116 34.5
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 1.1e-11 73.9 115 34.8
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 1.4e-11 73.6 121 36.4
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 1.4e-11 73.6 118 37.3
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.4e-11 73.6 119 34.5
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.4e-11 73.6 123 31.7
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.4e-11 73.6 116 32.8
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.4e-11 73.6 116 33.6
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.4e-11 73.6 116 35.3
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 1.4e-11 73.6 118 33.1
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.9e-11 73.2 119 34.5
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.9e-11 73.2 119 32.8
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.9e-11 73.2 116 34.5
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 1.9e-11 73.2 116 35.3
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 2.5e-11 72.8 119 33.6
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 2.5e-11 72.8 118 36.4
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.5e-11 72.8 116 34.5
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 3.2e-11 72.4 118 35.6
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 3.2e-11 72.4 118 35.6
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 3.2e-11 72.4 119 36.1
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 3.2e-11 72.4 116 36.2
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.2e-11 72.4 116 36.2
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.2e-11 72.4 116 36.2
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.2e-11 72.4 116 36.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.2e-11 72.4 116 36.2
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 3.2e-11 72.4 123 34.1
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 3.2e-11 72.4 135 33.3
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 4.2e-11 72.0 127 37.0
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 4.2e-11 72.0 116 34.5
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 4.2e-11 72.0 122 33.6
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 4.2e-11 72.0 116 36.2
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 4.2e-11 72.0 116 34.5
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 5.5e-11 71.6 123 35.0
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 5.5e-11 71.6 116 33.6
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 5.5e-11 71.6 116 32.8
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 5.5e-11 71.6 121 36.4
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 7.2e-11 71.2 121 33.9
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 7.2e-11 71.2 128 36.7
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 7.2e-11 71.2 123 35.0
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 9.4e-11 70.9 127 37.0
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 9.4e-11 70.9 124 34.7
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 9.4e-11 70.9 123 33.3
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 9.4e-11 70.9 121 37.2
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.2e-10 70.5 99 38.4
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-10 70.5 127 37.0
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-10 70.5 127 37.0
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 1.2e-10 70.5 131 35.9
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 1.2e-10 70.5 127 37.0
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.2e-10 70.5 113 35.4
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.6e-10 70.1 116 33.6
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 2.7e-10 69.3 89 40.4
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 3.6e-10 68.9 116 31.0
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 3.6e-10 68.9 116 34.5
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 4.6e-10 68.6 89 40.4
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.1e-10 68.2 115 33.9
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 3.0e-09 65.9 89 38.2
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.0e-09 65.9 121 30.6
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.9e-09 65.5 116 32.8
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.7e-09 64.7 141 30.5
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 8.8e-09 64.3 104 32.7
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 4.8e-07 58.5 115 29.6
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 5.3e-06 55.1 83 33.7


User provided reference genes

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