Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 6.0e-202 707.2 339 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 4.6e-93 345.5 339 52.5
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.9e-91 340.1 342 50.0
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 5.6e-91 338.6 339 49.9
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 3.6e-90 335.9 339 49.6
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 4.8e-90 335.5 338 50.3
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.4e-89 334.0 342 49.4
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.8e-89 333.6 342 49.1
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 2.4e-89 333.2 338 50.0
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 4.0e-89 332.4 342 48.8
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 4.0e-89 332.4 342 48.8
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 2.0e-88 330.1 341 49.9
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 2.0e-88 330.1 338 49.1
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.4e-88 329.3 338 47.9
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.4e-88 329.3 337 48.7
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 7.6e-88 328.2 343 49.0
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.7e-87 327.0 345 48.4
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.7e-87 327.0 338 49.1
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 2.2e-87 326.6 345 48.4
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.9e-87 326.2 345 49.0
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.9e-87 326.2 339 49.6
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.8e-87 325.9 342 49.1
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 3.8e-87 325.9 338 48.5
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 4.9e-87 325.5 341 48.7
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 4.9e-87 325.5 338 49.1
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 8.4e-87 324.7 345 48.4
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.1e-86 324.3 339 48.7
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.4e-86 323.9 339 48.4
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.9e-86 323.6 339 47.8
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.4e-86 323.2 339 47.8
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 3.2e-86 322.8 342 48.8
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 4.2e-86 322.4 347 48.7
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 5.4e-86 322.0 339 48.4
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 5.4e-86 322.0 342 48.5
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 5.4e-86 322.0 339 48.1
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 5.4e-86 322.0 339 47.8
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 5.4e-86 322.0 330 49.4
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 7.1e-86 321.6 339 46.6
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 7.1e-86 321.6 342 47.1
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 7.1e-86 321.6 339 47.2
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 9.3e-86 321.2 341 46.0
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 9.3e-86 321.2 338 48.2
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 9.3e-86 321.2 339 47.8
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 9.3e-86 321.2 339 47.8
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.6e-85 320.5 339 47.8
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.1e-85 320.1 339 48.4
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.5e-85 319.3 342 47.7
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 4.6e-85 318.9 339 47.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 6.0e-85 318.5 340 46.5
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 6.0e-85 318.5 339 46.9
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.0e-84 317.8 339 46.6
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 1.8e-84 317.0 345 46.7
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 2.3e-84 316.6 341 47.2
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 4.3e-83 312.4 339 46.9
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 7.4e-83 311.6 359 45.4
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.7e-82 309.3 352 46.0
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 4.8e-82 308.9 372 44.4
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.4e-81 307.4 338 46.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 2.4e-81 306.6 356 45.8
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.1e-81 306.2 342 47.1
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 9.0e-81 304.7 339 45.1
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.5e-80 303.9 338 46.4
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.6e-80 303.1 341 47.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.5e-80 302.4 343 46.6
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 9.9e-80 301.2 344 46.5
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.7e-79 300.4 342 46.2
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 3.8e-79 299.3 353 44.2
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 4.9e-79 298.9 338 46.7
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.1e-78 297.7 340 46.5
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 2.5e-78 296.6 327 48.0
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 3.2e-78 296.2 348 44.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 4.2e-78 295.8 329 48.0
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 7.1e-78 295.0 332 47.6
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.6e-77 293.9 332 46.7
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.6e-77 293.9 327 47.1
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 4.6e-77 292.4 339 46.3
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.0e-76 291.2 358 45.5
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.3e-76 290.8 339 46.3
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 5.1e-76 288.9 338 45.9
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 8.7e-76 288.1 333 45.9
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.1e-73 281.2 363 43.8
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 4.5e-72 275.8 330 45.5
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.3e-71 274.2 317 46.4
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 4.6e-69 265.8 327 44.0
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.3e-68 263.5 363 41.3
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 9.7e-67 258.1 287 47.0
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.8e-66 256.5 327 43.1
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 3.7e-66 256.1 338 41.7
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.0e-63 248.1 339 39.5
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.7e-63 247.3 344 42.2
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.2e-61 241.1 255 47.8
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 8.2e-58 228.4 341 39.3
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.1e-57 226.5 342 39.8
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.7e-53 213.4 339 38.9
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 3.0e-52 209.9 339 37.8
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 9.7e-51 204.9 187 52.4
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.2e-50 203.8 327 37.6
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.8e-50 203.4 187 54.5
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.8e-49 200.7 187 51.9
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 1.2e-48 198.0 187 52.9
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.2e-48 198.0 187 52.9
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.0e-48 197.2 187 51.9
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.0e-48 197.2 187 52.4
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 5.9e-48 195.7 187 52.4
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.0e-47 194.9 187 51.3
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 3.8e-47 193.0 280 40.7
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 2.5e-46 190.3 357 33.9
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.1e-41 173.3 339 34.2
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 5.3e-41 172.6 277 33.9
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 3.2e-38 163.3 342 33.0
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 7.5e-35 152.1 159 48.4
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-30 138.3 154 46.8
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-30 138.3 154 46.8
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 7.2e-30 135.6 161 46.6
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.7e-29 133.7 339 28.0
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.4e-28 131.3 312 31.7
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.6e-27 127.1 341 30.2
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.7e-26 123.2 151 42.4
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 5.4e-25 119.4 176 36.9
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.7e-24 117.1 340 29.7
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.5e-22 111.3 97 53.6
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.5e-19 101.3 339 27.7
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.2e-17 93.6 339 25.7
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.5e-14 84.0 126 38.9
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.8e-13 80.5 119 35.3
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 2.8e-13 80.5 123 35.0
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.4e-12 78.2 124 37.9
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 3.4e-11 73.6 121 32.2
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 6.4e-10 69.3 122 34.4
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 4.6e-08 63.2 47 55.3
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.3e-07 61.6 59 45.8
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.9e-07 60.1 92 43.5
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.9e-07 60.1 51 43.1
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 7.3e-06 55.8 31 67.7


User provided reference genes

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