Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 3.4e-247 857.8 422 100.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.3e-57 227.3 484 34.1
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.0e-57 226.9 487 35.3
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 5.1e-57 226.1 488 34.2
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-56 224.6 486 33.7
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 3.3e-56 223.4 492 33.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 4.7e-55 219.5 497 33.0
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.4e-54 218.0 505 32.5
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.4e-54 218.0 503 32.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.8e-54 217.6 503 32.8
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.8e-54 217.6 492 32.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.8e-54 217.6 503 33.4
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.4e-54 217.2 497 33.8
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 3.1e-54 216.9 496 33.1
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 4.0e-54 216.5 499 33.3
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 4.0e-54 216.5 498 33.3
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.0e-54 216.5 492 32.5
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.0e-54 216.5 492 32.5
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 4.0e-54 216.5 501 32.7
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 4.0e-54 216.5 497 32.2
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 5.2e-54 216.1 493 32.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 6.8e-54 215.7 465 36.3
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.2e-53 214.9 498 32.1
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.5e-53 214.5 507 32.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.5e-53 214.5 500 32.6
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 2.6e-53 213.8 486 33.7
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 3.4e-53 213.4 506 34.0
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 5.8e-53 212.6 509 32.8
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 5.8e-53 212.6 501 32.5
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 9.9e-53 211.8 505 33.7
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 9.9e-53 211.8 496 33.1
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 9.9e-53 211.8 496 32.9
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.7e-52 211.1 495 31.9
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.7e-52 211.1 508 33.1
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.2e-52 210.7 499 33.1
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 3.8e-52 209.9 511 31.7
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.9e-51 207.6 488 31.8
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.9e-51 207.6 500 31.8
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 3.2e-51 206.8 515 32.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 5.4e-51 206.1 501 32.5
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 9.2e-51 205.3 497 31.4
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 2.1e-50 204.1 494 32.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.1e-50 204.1 521 30.3
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.1e-50 204.1 515 30.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.1e-50 204.1 514 31.1
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.7e-50 203.8 516 30.2
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.5e-50 203.4 504 32.1
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 3.5e-50 203.4 496 31.5
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.5e-50 203.4 490 32.9
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 4.6e-50 203.0 498 32.1
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 4.6e-50 203.0 498 32.1
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 4.6e-50 203.0 502 30.3
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 6.0e-50 202.6 498 31.1
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 6.0e-50 202.6 502 31.5
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 6.0e-50 202.6 505 32.3
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 7.8e-50 202.2 515 30.1
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.0e-49 201.8 513 30.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.7e-49 201.1 474 33.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.7e-49 201.1 500 33.6
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.3e-49 200.7 498 31.3
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 2.3e-49 200.7 498 31.3
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.3e-49 200.7 510 32.2
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 3.0e-49 200.3 505 30.9
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.9e-49 199.9 468 32.9
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 5.1e-49 199.5 501 33.3
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 5.1e-49 199.5 507 31.4
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 8.7e-49 198.7 508 30.7
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-48 198.4 504 31.5
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-48 198.4 493 32.9
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.5e-48 197.2 498 31.9
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.3e-48 196.4 486 32.1
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 7.3e-48 195.7 503 31.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.2e-47 194.9 506 31.8
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.2e-47 194.9 483 31.1
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.2e-47 194.9 508 31.1
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.8e-47 193.7 508 31.3
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 6.2e-47 192.6 346 37.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.1e-47 192.2 505 31.9
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.1e-46 191.8 505 30.7
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.8e-46 191.0 344 37.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 9.0e-46 188.7 342 37.7
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.0e-45 187.6 373 36.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.6e-45 187.2 462 32.5
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 3.4e-45 186.8 458 31.9
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 4.4e-45 186.4 562 29.9
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.7e-44 184.5 536 29.7
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.9e-44 183.7 332 38.0
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 4.9e-44 183.0 421 34.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.4e-43 179.5 449 31.4
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.4e-43 179.5 489 30.1
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.6e-42 177.9 348 35.9
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.0e-41 175.3 349 35.5
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.3e-40 169.1 510 29.2
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.6e-39 167.9 421 31.1
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.8e-39 167.2 496 28.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.1e-38 165.2 337 35.9
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 2.4e-38 164.1 409 32.5
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 5.3e-38 162.9 349 34.4
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 6.9e-38 162.5 407 31.4
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 4.9e-36 156.4 359 31.8
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 6.4e-36 156.0 349 34.1
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 7.1e-35 152.5 435 31.3
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.2e-34 151.8 276 36.2
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.8e-33 147.9 476 29.0
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.9e-33 146.7 375 29.9
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 2.5e-32 144.1 472 28.6
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.8e-31 140.6 310 34.2
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 8.1e-31 139.0 430 30.9
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.1e-30 138.7 379 30.9
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-29 133.7 346 31.2
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.9e-28 130.6 343 32.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 4.2e-27 126.7 327 30.0
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 5.5e-27 126.3 297 32.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.6e-26 124.8 213 39.0
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 2.7e-26 124.0 308 31.5
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.5e-26 123.6 333 29.7
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-25 122.1 340 29.1
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 3.0e-25 120.6 232 36.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.5e-24 117.5 216 36.6
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 4.3e-24 116.7 222 37.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.3e-23 115.2 211 37.9
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-20 104.4 248 29.0
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 2.5e-19 100.9 321 25.5
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.2e-19 100.1 267 31.8
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.5e-19 99.8 253 28.9
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-17 95.5 348 26.7
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.7e-16 89.7 174 35.6
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.4e-16 89.4 176 34.1
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-13 81.6 156 36.5
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-12 78.2 102 39.2
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 1.7e-12 78.2 98 41.8
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 3.2e-11 73.9 201 31.3
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.2e-11 73.6 92 41.3
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.2e-11 72.8 96 38.5
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 3.6e-10 70.5 101 42.6
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-09 66.2 243 25.1
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 6.7e-09 66.2 99 37.4
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 8.8e-09 65.9 136 36.8
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-08 65.5 365 22.7
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.5e-08 64.3 137 35.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 4.3e-08 63.5 372 21.5
SpUn1792_0010 Schrenkiella parvula HOM05D004308 ORTHO05D372100 2.8e-07 60.8 106 34.9
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-07 60.1 103 35.0
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 6.3e-07 59.7 206 24.8
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-06 58.2 103 35.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.1e-06 57.0 96 34.4


User provided reference genes

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