Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 0.0e+00 1380.2 760 100.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.3e-22 111.3 721 23.7
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.6e-19 101.7 636 26.1
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 4.4e-19 100.9 687 24.6
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.4e-17 95.9 687 22.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 9.2e-17 93.2 683 22.3
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.2e-16 92.8 666 25.4
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.6e-16 92.4 743 23.4
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 2.7e-16 91.7 689 22.8
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 6.0e-16 90.5 710 22.3
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.0e-15 89.7 712 22.8
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.7e-15 89.0 687 22.9
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 2.3e-15 88.6 726 21.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.3e-15 88.6 689 23.1
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.0e-15 88.2 725 22.8
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.9e-15 87.8 744 23.0
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.9e-15 87.8 686 23.6
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 8.6e-15 86.7 690 24.1
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.1e-14 86.3 690 24.5
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.1e-14 86.3 687 23.3
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.5e-14 85.9 686 23.6
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 1.5e-14 85.9 743 23.3
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.5e-14 85.1 737 23.5
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.5e-14 85.1 741 23.8
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.3e-14 84.3 744 22.8
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 5.6e-14 84.0 688 23.1
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 5.6e-14 84.0 731 22.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 7.3e-14 83.6 734 22.5
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 7.3e-14 83.6 686 23.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 7.3e-14 83.6 709 22.4
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 7.3e-14 83.6 687 23.3
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 9.5e-14 83.2 709 22.4
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.2e-13 82.8 690 23.2
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.2e-13 82.8 686 22.4
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.6e-13 82.4 700 24.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.6e-13 82.4 732 22.1
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.6e-13 82.4 737 22.4
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.1e-13 82.0 715 22.9
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.6e-13 81.3 691 22.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 3.6e-13 81.3 686 22.6
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 4.7e-13 80.9 683 22.3
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.7e-13 80.9 724 23.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 6.2e-13 80.5 691 22.4
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 8.1e-13 80.1 738 22.2
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 8.1e-13 80.1 733 22.1
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 8.1e-13 80.1 748 21.9
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 8.1e-13 80.1 592 23.3
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 8.1e-13 80.1 691 22.4
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.1e-12 79.7 740 23.0
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.4e-12 79.3 594 24.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-12 79.0 686 22.6
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.8e-12 79.0 710 23.7
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.4e-12 78.6 685 22.6
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 2.4e-12 78.6 687 22.4
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 2.4e-12 78.6 742 21.8
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.4e-12 78.6 692 23.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 2.4e-12 78.6 688 23.4
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.1e-12 78.2 705 22.4
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 4.0e-12 77.8 691 23.2
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 4.0e-12 77.8 768 22.9
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 5.2e-12 77.4 742 22.2
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 8.9e-12 76.6 690 22.3
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 8.9e-12 76.6 707 24.3
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.2e-11 76.3 723 23.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.2e-11 76.3 687 22.7
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.2e-11 76.3 712 22.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.2e-11 76.3 681 22.3
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.2e-11 76.3 686 23.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.2e-11 76.3 707 21.9
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-11 75.9 572 24.3
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.5e-11 75.9 690 22.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.5e-11 75.9 686 22.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 2.0e-11 75.5 690 22.5
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 2.0e-11 75.5 686 22.6
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.0e-11 75.5 768 22.8
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 2.6e-11 75.1 687 22.6
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.4e-11 74.7 738 22.2
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.4e-11 74.7 705 22.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 4.4e-11 74.3 686 22.3
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 9.9e-11 73.2 686 22.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 9.9e-11 73.2 686 22.2
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.3e-10 72.8 731 21.8
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.7e-10 72.4 667 21.9
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.7e-10 72.4 708 21.3
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 2.2e-10 72.0 721 21.4
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 2.9e-10 71.6 739 23.1
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.9e-10 71.6 688 21.9
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 4.9e-10 70.9 690 21.9
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 6.4e-10 70.5 686 21.9
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.4e-10 70.5 692 22.1
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 6.4e-10 70.5 694 21.8
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.1e-09 69.7 727 22.4
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.1e-09 69.7 686 22.2
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.1e-09 69.7 705 21.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.4e-09 69.3 565 21.9
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 3.2e-09 68.2 695 22.7
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 4.1e-09 67.8 690 21.9
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 5.4e-09 67.4 706 22.1
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-08 66.2 725 21.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.2e-08 66.2 716 21.9
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.8e-08 63.5 693 21.5
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.3e-07 62.8 403 23.6
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.7e-07 62.4 687 21.5
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.7e-07 62.4 687 21.5
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.0e-07 61.6 712 21.6
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 3.0e-07 61.6 737 22.5
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.6e-07 60.5 731 21.3
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 8.7e-07 60.1 721 21.9
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 8.7e-07 60.1 751 22.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-06 59.3 735 20.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.5e-06 59.3 581 21.7
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.9e-06 58.9 744 20.8
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.9e-06 58.9 537 23.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.5e-06 58.5 710 21.5
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 3.3e-06 58.2 735 20.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 5.6e-06 57.4 693 22.1


User provided reference genes

Program Settings