Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 0.0e+00 2623.6 1315 100.0
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.5e-25 122.5 454 26.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.7e-24 119.0 493 25.8
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.5e-24 118.6 510 25.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.0e-23 117.1 493 25.2
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-23 116.7 435 26.0
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.3e-23 115.9 239 33.1
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.0e-23 115.5 504 25.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.0e-23 115.5 500 25.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-23 114.8 508 25.8
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 6.7e-23 114.4 492 25.6
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 6.7e-23 114.4 492 25.6
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 6.7e-23 114.4 500 26.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 6.7e-23 114.4 499 25.5
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 8.7e-23 114.0 544 24.4
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 8.7e-23 114.0 302 30.1
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.5e-22 113.2 490 25.3
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.9e-22 112.8 491 25.5
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.9e-22 112.8 298 29.9
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.3e-22 112.1 498 26.3
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 4.3e-22 111.7 491 25.9
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 5.7e-22 111.3 298 29.5
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 9.7e-22 110.5 442 26.9
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 9.7e-22 110.5 500 26.4
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.3e-21 110.2 300 29.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.3e-21 110.2 500 24.6
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.3e-21 110.2 302 29.5
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.3e-21 110.2 558 25.3
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.6e-21 109.8 492 25.4
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.6e-21 109.8 298 30.2
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.6e-21 109.8 316 29.1
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.8e-21 109.0 298 29.5
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.8e-21 109.0 298 29.2
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.8e-21 109.0 299 29.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.8e-21 108.2 300 28.7
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 6.3e-21 107.8 500 25.6
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 8.2e-21 107.5 297 29.0
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 8.2e-21 107.5 298 28.2
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 8.2e-21 107.5 298 29.9
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.1e-20 107.1 288 28.8
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.1e-20 107.1 288 28.8
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.1e-20 107.1 298 27.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.4e-20 106.7 459 26.6
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.4e-20 106.7 316 29.1
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.4e-20 106.7 312 27.9
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.4e-20 106.7 298 28.9
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.8e-20 106.3 288 28.8
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.4e-20 105.9 288 29.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.4e-20 105.9 288 29.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 3.1e-20 105.5 300 30.7
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.1e-20 105.5 250 30.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 3.1e-20 105.5 298 28.5
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 4.1e-20 105.1 315 28.9
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.1e-20 105.1 288 29.2
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 4.1e-20 105.1 288 29.2
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 4.1e-20 105.1 298 30.2
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 4.1e-20 105.1 500 25.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 4.1e-20 105.1 298 28.9
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.3e-20 104.8 297 28.6
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 6.9e-20 104.4 501 25.7
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 6.9e-20 104.4 300 28.7
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 6.9e-20 104.4 295 29.8
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 9.0e-20 104.0 500 25.8
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-19 103.6 297 28.3
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.5e-19 103.2 499 24.8
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.5e-19 103.2 302 29.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.5e-19 103.2 298 27.9
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.5e-19 103.2 292 28.8
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.5e-19 103.2 298 28.2
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.5e-19 103.2 299 28.4
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.0e-19 102.8 298 28.2
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.0e-19 102.8 298 27.5
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 3.4e-19 102.1 521 25.1
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 4.5e-19 101.7 567 24.2
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 4.5e-19 101.7 298 28.5
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 4.5e-19 101.7 298 28.9
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 4.5e-19 101.7 355 26.2
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 5.9e-19 101.3 298 27.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 5.9e-19 101.3 298 28.5
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 5.9e-19 101.3 302 28.8
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 5.9e-19 101.3 521 25.5
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 5.9e-19 101.3 298 27.2
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 7.7e-19 100.9 298 28.5
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 7.7e-19 100.9 299 26.8
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 7.7e-19 100.9 352 27.0
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.0e-18 100.5 298 28.2
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.0e-18 100.5 490 23.9
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.0e-18 100.5 242 31.8
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.3e-18 100.1 300 27.3
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.9e-18 99.0 300 28.3
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.8e-18 98.6 317 27.8
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.8e-18 98.6 298 27.9
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.8e-18 98.6 298 27.9
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 3.8e-18 98.6 299 28.8
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 6.5e-18 97.8 369 26.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 8.5e-18 97.4 300 27.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 8.5e-18 97.4 298 27.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.2e-17 95.1 300 28.3
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 7.2e-17 94.4 297 27.6
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 9.4e-17 94.0 298 28.2
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 9.4e-17 94.0 252 29.0
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.1e-16 92.8 252 29.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 7.9e-16 90.9 499 25.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.1e-15 88.2 297 25.9
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 8.8e-15 87.4 273 28.9
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.7e-13 82.0 282 25.5
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 6.3e-13 81.3 282 26.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 8.2e-13 80.9 300 25.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-12 80.5 250 26.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-12 80.5 300 25.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-12 80.1 300 25.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-12 79.0 282 26.2
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-12 79.0 282 26.2
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.3e-12 78.2 300 24.7
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.0e-11 76.3 282 25.5
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.6e-11 75.9 282 25.5
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 3.4e-11 75.5 251 25.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.9e-11 74.7 282 25.5
Pp3c14_3770 Physcomitrium patens HOM05D000826 ORTHO05D006448 7.7e-11 74.3 227 27.8
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.2e-10 72.8 299 23.7
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.9e-10 72.4 282 24.8
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.9e-10 72.4 300 23.7
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 5.0e-10 71.6 282 25.2
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 5.0e-10 71.6 282 25.2
Sabra05G0079000 Salix brachista HOM05D000826 ORTHO05D004603 6.5e-10 71.2 264 26.5
Ca_29265_v3 Cicer arietinum L. HOM05D000826 ORTHO05D001831 8.5e-10 70.9 234 29.9
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-09 70.1 314 22.6
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.9e-09 69.7 216 27.3
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 7.2e-09 67.8 283 23.7
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 9.4e-09 67.4 77 44.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-08 67.0 251 23.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-08 67.0 314 22.3
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.7e-08 65.9 218 28.0
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.0e-07 63.9 77 44.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.9e-07 62.0 87 41.4
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 5.1e-07 61.6 211 28.4
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.1e-07 61.6 77 42.9
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-06 60.1 118 33.9


User provided reference genes

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