Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 3.1e-53 211.5 101 100.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 5.7e-23 110.9 93 52.7
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 7.4e-23 110.5 92 53.3
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.7e-22 108.2 93 50.5
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.4e-21 106.3 97 47.4
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.8e-21 105.9 92 48.9
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.4e-21 105.5 91 50.5
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.1e-21 105.1 93 48.4
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.1e-21 105.1 91 49.5
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 5.3e-21 104.4 93 48.4
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 5.3e-21 104.4 92 47.8
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.3e-21 104.4 92 47.8
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.3e-21 104.4 92 47.8
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 6.9e-21 104.0 92 51.1
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 6.9e-21 104.0 92 50.0
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 6.9e-21 104.0 92 48.9
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.1e-21 103.6 91 49.5
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 9.1e-21 103.6 91 49.5
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-20 103.2 92 46.7
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-20 103.2 92 46.7
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.2e-20 103.2 91 49.5
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.2e-20 103.2 91 49.5
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.2e-20 103.2 92 48.9
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.2e-20 103.2 92 48.9
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.5e-20 102.8 92 50.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.5e-20 102.8 92 48.9
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.5e-20 102.8 92 48.9
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.5e-20 102.8 92 46.7
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.0e-20 102.4 92 48.9
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 2.0e-20 102.4 93 45.2
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 2.0e-20 102.4 92 48.9
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.0e-20 102.4 93 48.4
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.6e-20 102.1 99 45.5
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.6e-20 102.1 92 48.9
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.6e-20 102.1 92 46.7
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 2.6e-20 102.1 92 47.8
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.4e-20 101.7 91 47.3
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.4e-20 101.7 92 48.9
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 3.4e-20 101.7 91 48.4
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.4e-20 101.7 93 47.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 3.4e-20 101.7 92 46.7
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 3.4e-20 101.7 92 47.8
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 47.8
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 47.8
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 50.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 50.0
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 47.8
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 50.0
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.5e-20 101.3 93 47.3
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 50.0
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 4.5e-20 101.3 93 48.4
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 4.5e-20 101.3 92 45.7
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.9e-20 100.9 92 46.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 5.9e-20 100.9 92 47.8
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 5.9e-20 100.9 92 47.8
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 7.7e-20 100.5 92 46.7
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 7.7e-20 100.5 92 50.0
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 7.7e-20 100.5 98 49.0
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 46.7
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 48.9
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 47.8
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.0e-19 100.1 92 46.7
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.0e-19 100.1 91 49.5
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.0e-19 100.1 91 48.4
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.0e-19 100.1 99 44.4
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.0e-19 100.1 93 48.4
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.3e-19 99.8 97 46.4
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.3e-19 99.8 92 46.7
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.3e-19 99.8 92 47.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.3e-19 99.8 92 47.8
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.7e-19 99.4 91 48.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.7e-19 99.4 91 49.5
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.7e-19 99.4 91 48.4
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.7e-19 99.4 92 47.8
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 47.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 47.8
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 47.8
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 46.7
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 45.7
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 46.7
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 45.7
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 46.7
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.2e-19 99.0 92 47.8
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.9e-19 98.6 92 47.8
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.9e-19 98.6 92 46.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.9e-19 98.6 92 45.7
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.9e-19 98.6 92 46.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 2.9e-19 98.6 92 45.7
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.9e-19 98.6 95 47.4
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.9e-19 98.6 92 45.7
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.8e-19 98.2 91 48.4
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 3.8e-19 98.2 92 45.7
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 3.8e-19 98.2 92 45.7
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.8e-19 98.2 93 47.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.8e-19 98.2 92 45.7
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.8e-19 98.2 92 45.7
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.8e-19 98.2 92 45.7
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.8e-19 98.2 92 45.7
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 5.0e-19 97.8 92 46.7
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.0e-19 97.8 90 48.9
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 5.0e-19 97.8 92 45.7
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 5.0e-19 97.8 92 46.7
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 5.0e-19 97.8 92 46.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 6.5e-19 97.4 92 46.7
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.5e-19 97.4 97 45.4
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.5e-19 97.4 92 45.7
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 6.5e-19 97.4 92 46.7
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 6.5e-19 97.4 92 44.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 8.5e-19 97.1 91 48.4
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 8.5e-19 97.1 92 45.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 8.5e-19 97.1 92 47.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.1e-18 96.7 92 45.7
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-18 96.7 93 46.2
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.4e-18 96.3 86 47.7
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.4e-18 96.3 92 44.6
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.9e-18 95.9 92 44.6
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.5e-18 95.5 93 46.2
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.5e-18 95.5 92 43.5
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.5e-18 95.5 92 44.6
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.2e-18 95.1 92 44.6
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.2e-18 95.1 91 44.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.2e-18 95.1 92 42.4
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 3.2e-18 95.1 92 45.7
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.2e-18 94.7 92 43.5
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.2e-18 94.7 91 44.0
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.2e-18 94.7 91 44.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.2e-18 94.7 91 45.1
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 5.5e-18 94.4 92 43.5
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 5.5e-18 94.4 90 44.4
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 5.5e-18 94.4 91 44.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.5e-18 94.4 92 43.5
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 9.4e-18 93.6 88 48.9
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 9.4e-18 93.6 88 48.9
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 9.4e-18 93.6 92 44.6
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.2e-17 93.2 92 43.5
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.6e-17 92.8 90 43.3
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.6e-17 92.8 90 43.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.6e-17 92.8 90 44.4
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.1e-17 92.4 83 47.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 7.9e-17 90.5 92 42.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.0e-15 85.9 93 40.9
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.0e-15 85.9 92 39.1
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.7e-14 82.8 74 44.6
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.2e-14 82.4 69 50.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 5.9e-12 74.3 63 49.2
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.5e-10 69.7 69 43.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.5e-10 69.7 155 27.1
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 7.2e-10 67.4 69 40.6
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.6e-09 65.1 65 44.6
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.5e-07 59.7 70 41.4
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 2.6e-07 58.9 99 31.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.4e-07 58.2 50 48.0
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 7.5e-07 57.4 50 50.0
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.2e-06 55.8 54 44.4
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.8e-06 55.5 54 44.4


User provided reference genes

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