Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.7e-211 738.0 395 100.0
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.5e-82 310.8 331 50.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.9e-82 310.5 263 59.3
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.9e-77 293.9 312 51.3
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 4.1e-77 292.7 316 51.3
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 5.4e-77 292.4 251 57.4
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 7.0e-77 292.0 312 51.3
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-76 291.2 313 50.8
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-76 291.2 313 50.8
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.2e-76 291.2 337 47.2
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.6e-76 290.8 316 50.6
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.6e-76 290.8 316 50.6
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.7e-76 290.0 317 50.2
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 3.5e-76 289.7 313 48.6
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 3.5e-76 289.7 310 50.0
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.5e-76 289.7 314 51.9
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 3.5e-76 289.7 315 51.1
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 3.5e-76 289.7 316 50.9
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 4.6e-76 289.3 320 51.6
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 4.6e-76 289.3 319 51.1
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 6.0e-76 288.9 312 51.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 6.0e-76 288.9 312 50.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 7.8e-76 288.5 312 51.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.0e-75 288.1 322 49.4
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.0e-75 288.1 315 51.1
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.3e-75 287.7 327 50.2
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.3e-75 287.7 316 50.9
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.3e-75 287.0 316 49.4
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.3e-75 287.0 312 49.0
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 8.6e-75 285.0 315 50.5
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.1e-74 284.6 312 51.3
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 2.5e-74 283.5 315 48.6
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.5e-74 283.5 323 49.2
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 2.5e-74 283.5 316 50.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.5e-74 283.5 315 50.8
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.5e-74 283.5 315 49.8
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 3.3e-74 283.1 316 50.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 3.3e-74 283.1 315 51.1
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 5.6e-74 282.3 313 49.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 5.6e-74 282.3 316 48.4
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 5.6e-74 282.3 312 49.0
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 5.6e-74 282.3 311 50.8
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 7.3e-74 282.0 316 50.3
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 7.3e-74 282.0 318 49.1
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 7.3e-74 282.0 312 49.0
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 9.5e-74 281.6 312 50.6
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 9.5e-74 281.6 315 50.5
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.2e-73 281.2 329 47.7
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.6e-73 280.8 312 48.7
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.6e-73 280.8 315 50.8
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.6e-73 280.8 311 50.2
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.6e-73 280.8 315 50.5
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 2.8e-73 280.0 315 50.2
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 3.6e-73 279.6 311 48.9
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.6e-73 279.6 324 49.1
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-73 279.6 315 50.2
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.6e-73 279.6 317 47.0
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 8.0e-73 278.5 315 49.2
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.1e-72 278.1 324 48.8
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-72 277.7 316 49.1
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.8e-72 277.3 316 48.7
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.8e-72 277.3 318 48.1
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 3.1e-72 276.6 319 47.6
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 3.1e-72 276.6 317 48.6
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 4.0e-72 276.2 320 48.4
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.2e-72 275.8 315 49.5
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.2e-72 275.8 312 49.7
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 5.2e-72 275.8 319 47.6
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 6.8e-72 275.4 315 47.3
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 6.8e-72 275.4 315 49.8
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 6.8e-72 275.4 313 48.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 6.8e-72 275.4 313 49.5
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 8.9e-72 275.0 308 51.0
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.2e-71 274.6 315 49.5
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-71 274.2 313 47.6
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.5e-71 274.2 318 47.8
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.0e-71 273.9 316 47.8
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.0e-71 273.9 320 48.8
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 2.6e-71 273.5 229 58.5
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.6e-71 273.5 321 48.0
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.6e-71 273.5 315 47.6
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 3.4e-71 273.1 314 47.8
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.4e-71 272.7 315 47.0
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 5.8e-71 272.3 313 49.5
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 5.8e-71 272.3 334 47.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-71 271.9 315 47.9
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 7.5e-71 271.9 319 47.0
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 7.5e-71 271.9 321 47.7
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 9.8e-71 271.6 332 47.6
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 9.8e-71 271.6 312 48.4
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 9.8e-71 271.6 312 47.8
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.3e-70 271.2 315 46.7
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.7e-70 270.8 316 47.5
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.7e-70 270.8 312 48.4
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.7e-70 270.8 317 47.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.9e-70 270.0 316 48.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.9e-70 270.0 317 47.3
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.9e-70 270.0 234 58.5
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.9e-70 270.0 310 48.4
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.7e-70 269.6 315 46.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.7e-70 269.6 315 47.6
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.3e-70 268.5 315 47.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 8.3e-70 268.5 327 46.8
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.1e-69 268.1 316 47.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.1e-69 268.1 333 47.4
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.4e-69 267.7 316 47.2
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.4e-69 267.7 316 47.2
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-69 267.7 315 47.6
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.1e-69 266.2 253 55.3
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 4.1e-69 266.2 313 47.6
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 4.6e-68 262.7 297 49.2
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 7.8e-68 261.9 234 57.3
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.1e-66 258.1 297 48.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.9e-66 257.3 315 45.1
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 2.5e-66 256.9 260 51.9
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 5.6e-66 255.8 345 46.1
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.1e-64 251.5 217 58.1
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.1e-64 251.5 217 58.1
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.4e-63 246.5 221 57.5
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 9.9e-63 245.0 339 45.7
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.2e-62 243.8 278 48.6
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-54 215.7 313 40.9
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 3.2e-53 213.4 240 46.2
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-52 211.1 312 41.3
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.3e-50 203.4 318 40.6
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 4.3e-50 203.0 192 55.7
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 8.1e-49 198.7 203 52.7
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.0e-43 180.3 285 41.8
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.8e-41 173.7 334 35.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 6.2e-41 172.6 225 45.8
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-40 171.8 147 58.5
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 5.8e-39 166.0 137 59.9
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.2e-38 164.1 143 58.7
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 9.3e-37 158.7 172 51.7
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.6e-34 148.7 125 59.2
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-30 138.3 112 61.6
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.9e-27 126.7 193 41.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 5.1e-27 126.3 119 58.0
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.6e-25 121.3 176 41.5
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.7e-25 120.2 109 54.1
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.2e-25 119.0 109 56.9
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-24 118.6 109 56.0
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-24 118.2 109 56.0
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-24 117.9 109 53.2
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.0e-24 116.7 109 56.0
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.3e-24 116.3 109 55.0
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.9e-24 115.9 106 52.8
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-23 115.2 109 54.1
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-23 114.0 109 52.3
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-22 112.1 81 69.1
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 7.1e-21 105.9 182 37.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 7.4e-18 95.9 93 52.7
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-17 94.7 156 39.7
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 6.3e-17 92.8 93 48.4
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.0e-16 89.0 251 31.5
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 4.5e-15 86.7 97 45.4
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 4.5e-15 86.7 97 45.4
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 7.7e-15 85.9 152 38.2
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.7e-14 84.7 90 46.7
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-14 84.7 80 52.5
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.8e-09 67.4 62 61.3
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.3e-08 63.2 61 50.8
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-07 62.0 61 50.8


User provided reference genes

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