Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G123 Micromonas commoda HOM05D003003 ORTHO05D009387 1.3e-177 626.3 326 100.0
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 6.5e-12 75.9 80 47.5
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 3.2e-11 73.6 80 48.8
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 8.8e-09 65.5 82 42.7
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 1.7e-07 61.2 82 41.5
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 1.7e-07 61.2 100 40.0
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 2.2e-07 60.8 100 38.0
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 2.8e-07 60.5 78 41.0
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 3.7e-07 60.1 78 41.0
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 4.8e-07 59.7 91 37.4
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 8.3e-07 58.9 78 39.7
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 8.3e-07 58.9 82 40.2
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 8.3e-07 58.9 78 39.7
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 1.1e-06 58.5 82 39.0
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 1.1e-06 58.5 82 40.2
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.4e-06 58.2 87 39.1
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.4e-06 58.2 99 34.3
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 1.4e-06 58.2 82 41.5
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 1.8e-06 57.8 78 37.2
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 1.8e-06 57.8 78 39.7
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 2.4e-06 57.4 76 39.5
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 2.4e-06 57.4 85 37.6
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 2.4e-06 57.4 76 39.5
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 2.4e-06 57.4 76 39.5
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 2.4e-06 57.4 85 38.8
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 2.4e-06 57.4 78 39.7
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 3.1e-06 57.0 85 38.8
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 3.1e-06 57.0 78 39.7
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 3.1e-06 57.0 78 39.7
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 3.1e-06 57.0 185 30.3
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 4.1e-06 56.6 83 36.1
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 4.1e-06 56.6 91 36.3
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 4.1e-06 56.6 82 39.0
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 4.1e-06 56.6 82 39.0
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 4.1e-06 56.6 82 39.0
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 4.1e-06 56.6 82 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 5.4e-06 56.2 73 37.0
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 5.4e-06 56.2 93 35.5
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 5.4e-06 56.2 78 38.5
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 5.4e-06 56.2 76 40.8
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 5.4e-06 56.2 78 39.7
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 5.4e-06 56.2 82 37.8
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 5.4e-06 56.2 78 38.5
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 5.4e-06 56.2 82 39.0
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 5.4e-06 56.2 82 39.0
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 5.4e-06 56.2 71 39.4
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 5.4e-06 56.2 76 40.8
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 5.4e-06 56.2 78 39.7
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 7.0e-06 55.8 78 38.5
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 7.0e-06 55.8 78 38.5
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 7.0e-06 55.8 76 39.5
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 7.0e-06 55.8 91 35.2
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 7.0e-06 55.8 82 40.2
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 7.0e-06 55.8 84 36.9
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 9.1e-06 55.5 137 29.9
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 9.1e-06 55.5 127 33.1
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 9.1e-06 55.5 71 40.8
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 9.1e-06 55.5 84 36.9
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 9.1e-06 55.5 84 36.9


User provided reference genes

Program Settings