Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 5.1e-254 880.6 434 100.0
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 7.9e-114 414.8 436 49.8
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.8e-113 413.7 464 50.4
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 3.9e-28 130.2 453 26.9
SMO347G0275 Selaginella moellendorffii HOM05D013921 ORTHO05D014814 1.3e-26 125.2 474 28.9
AagrBONN_evm.TU.Sc2ySwM_117.1486 Anthoceros agrestis HOM05D013921 ORTHO05D014814 4.0e-25 120.2 491 28.1
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 5.8e-24 116.3 476 26.3
Mapoly0016s0181 Marchantia polymorpha HOM05D013921 ORTHO05D014814 1.6e-21 108.2 474 26.8
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 7.3e-19 99.4 489 25.4
MCO06G109 Micromonas commoda HOM05D013921 ORTHO05D014814 1.3e-18 98.6 500 27.4
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 4.8e-18 96.7 434 26.0
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 6.2e-18 96.3 491 24.8
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 2.4e-17 94.4 472 26.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.2e-16 92.0 427 26.0
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.5e-16 91.7 431 25.3
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.5e-16 91.7 500 24.4
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.5e-16 91.7 431 25.1
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 2.0e-16 91.3 432 25.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 2.6e-16 90.9 439 24.6
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.6e-16 90.9 496 24.4
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.6e-16 90.9 431 24.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 4.5e-16 90.1 435 25.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.5e-16 90.1 431 24.8
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 9.9e-16 89.0 491 24.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 9.9e-16 89.0 499 25.3
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.3e-15 88.6 495 25.1
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.3e-15 88.6 489 24.9
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.3e-15 88.6 494 24.7
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 2.9e-15 87.4 453 27.8
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.8e-15 87.0 499 25.3
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 4.9e-15 86.7 486 24.7
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 4.9e-15 86.7 432 24.5
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 6.4e-15 86.3 494 24.9
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 6.4e-15 86.3 490 24.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.1e-14 85.5 495 24.6
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.1e-14 85.5 432 25.7
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.1e-14 85.5 489 24.1
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.1e-14 85.5 433 24.0
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.1e-14 85.5 438 24.7
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.4e-14 85.1 432 25.2
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.4e-14 85.1 419 26.3
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.4e-14 85.1 431 24.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.9e-14 84.7 420 25.5
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.9e-14 84.7 489 24.3
Pp3c19_11010 Physcomitrium patens HOM05D013921 ORTHO05D014814 2.4e-14 84.3 327 28.7
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.4e-14 84.3 411 25.1
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.2e-14 84.0 431 24.1
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 3.2e-14 84.0 490 25.1
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 4.2e-14 83.6 492 24.0
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.5e-14 83.2 431 24.1
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.5e-14 83.2 490 23.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 5.5e-14 83.2 491 24.4
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 7.1e-14 82.8 491 24.0
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 7.1e-14 82.8 493 23.1
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 9.3e-14 82.4 410 23.9
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 9.3e-14 82.4 419 24.6
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.2e-13 82.0 489 24.9
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.2e-13 82.0 412 24.8
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.6e-13 81.6 413 24.9
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.1e-13 81.3 432 25.5
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.7e-13 80.9 494 24.1
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.7e-13 80.9 431 23.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.5e-13 80.5 499 23.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.5e-13 80.5 437 25.4
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.0e-13 79.7 489 24.7
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 6.0e-13 79.7 411 25.1
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 6.0e-13 79.7 494 24.9
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 6.0e-13 79.7 445 24.5
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 7.9e-13 79.3 409 24.7
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 7.9e-13 79.3 495 23.4
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.3e-12 78.6 490 22.9
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 1.3e-12 78.6 454 24.9
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.3e-12 78.6 495 23.8
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.3e-12 78.6 495 24.2
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.8e-12 78.2 432 25.0
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.8e-12 78.2 433 23.6
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.8e-12 78.2 433 23.6
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.8e-12 78.2 491 23.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.8e-12 78.2 438 24.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.8e-12 78.2 491 23.6
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 1.8e-12 78.2 501 25.0
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.3e-12 77.8 498 23.9
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.3e-12 77.8 414 24.9
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 3.0e-12 77.4 279 26.2
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.0e-12 77.4 505 23.2
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 5.1e-12 76.6 490 24.3
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.1e-12 76.6 494 23.5
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.1e-12 76.6 494 23.5
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.1e-12 76.6 494 23.5
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 5.1e-12 76.6 499 24.6
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 6.7e-12 76.3 490 23.9
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 6.7e-12 76.3 432 23.4
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 8.7e-12 75.9 494 23.7
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 8.7e-12 75.9 490 24.1
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 8.7e-12 75.9 489 23.3
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.5e-11 75.1 432 24.3
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.5e-11 75.1 492 23.0
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.5e-11 75.1 410 23.9
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.9e-11 74.7 327 26.3
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.5e-11 74.3 499 24.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 3.3e-11 73.9 433 23.8
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.3e-11 73.9 438 23.3
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.3e-11 73.9 434 23.5
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 5.6e-11 73.2 438 23.7
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 5.6e-11 73.2 492 22.2
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 5.6e-11 73.2 434 24.0
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.6e-11 73.2 522 23.0
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 7.4e-11 72.8 438 23.5
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.4e-11 72.8 434 23.7
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 7.4e-11 72.8 337 23.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-10 72.0 437 23.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 2.8e-10 70.9 490 23.1
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.8e-10 70.9 437 23.1
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.8e-10 70.9 432 22.9
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 3.7e-10 70.5 477 25.2
CBR_g40184 Chara braunii HOM05D013921 ORTHO05D014814 3.7e-10 70.5 457 24.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 3.7e-10 70.5 450 24.0
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 4.8e-10 70.1 452 23.5
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 4.8e-10 70.1 435 22.8
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 6.2e-10 69.7 495 23.6
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 8.1e-10 69.3 439 22.3
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.1e-10 69.3 428 24.1
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 8.1e-10 69.3 437 23.8
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 8.1e-10 69.3 433 24.0
CBR_g38300 Chara braunii HOM05D013921 ORTHO05D014814 1.4e-09 68.6 457 25.2
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.4e-09 68.6 337 24.3
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.8e-09 68.2 493 23.3
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.8e-09 68.2 532 22.4
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 2.4e-09 67.8 494 23.7
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.1e-09 67.4 528 23.7
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 4.0e-09 67.0 495 23.4
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 5.3e-09 66.6 499 23.2
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 5.3e-09 66.6 409 23.2
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-08 65.1 438 23.1
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.9e-07 60.8 408 24.0
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 4.9e-07 60.1 278 23.7
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 6.5e-07 59.7 220 30.5
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 8.4e-07 59.3 477 23.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.4e-06 58.5 440 22.5
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 1.9e-06 58.2 483 23.0
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 7.1e-06 56.2 337 22.6


User provided reference genes

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