Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 9.9e-214 746.5 376 100.0
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 9.1e-50 201.8 323 38.1
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 5.9e-49 199.1 323 37.5
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.3e-48 198.0 331 36.6
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 6.5e-48 195.7 304 37.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.1e-47 194.9 331 36.3
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.5e-47 194.5 331 36.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-47 194.5 331 36.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.2e-47 193.4 331 36.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 4.2e-47 193.0 341 35.2
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 4.2e-47 193.0 330 35.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 9.4e-47 191.8 331 35.6
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.2e-46 191.4 331 35.6
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.6e-46 191.0 306 36.6
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 3.0e-45 186.8 302 36.4
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.8e-45 185.7 334 35.3
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 7.5e-44 182.2 305 37.4
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 7.5e-44 182.2 300 36.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 9.8e-44 181.8 303 35.3
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 9.8e-44 181.8 335 34.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 9.8e-44 181.8 303 35.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-43 181.4 302 38.4
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.3e-43 181.4 330 36.1
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.7e-43 181.0 301 35.9
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.2e-43 180.6 301 36.9
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-43 180.6 302 38.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.2e-43 180.6 302 38.4
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.2e-43 180.6 303 37.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.8e-43 179.5 303 36.0
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 4.8e-43 179.5 303 34.7
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 6.3e-43 179.1 302 38.1
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 6.3e-43 179.1 301 36.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 6.3e-43 179.1 335 33.7
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.1e-42 178.3 330 33.3
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.1e-42 178.3 304 35.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.4e-42 177.9 303 36.0
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.4e-42 177.9 303 35.3
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.8e-42 177.6 335 33.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.8e-42 177.6 332 34.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.1e-42 176.8 337 33.2
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.1e-42 176.8 337 33.2
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 4.1e-42 176.4 303 34.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 5.4e-42 176.0 307 34.9
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 5.4e-42 176.0 304 35.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 7.0e-42 175.6 301 35.9
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.0e-42 175.6 331 35.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 7.0e-42 175.6 327 34.9
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 7.0e-42 175.6 307 34.9
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.2e-41 174.9 301 35.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.2e-41 174.9 352 33.0
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.6e-41 174.5 337 34.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.0e-41 174.1 303 34.0
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.0e-41 174.1 316 34.8
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.0e-41 174.1 303 35.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.7e-41 173.7 303 34.0
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 2.7e-41 173.7 303 34.0
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.7e-41 173.7 301 35.5
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 3.5e-41 173.3 335 33.7
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.5e-41 172.9 335 32.5
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.5e-41 172.9 331 35.0
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 4.5e-41 172.9 303 35.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 4.5e-41 172.9 338 33.4
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 5.9e-41 172.6 303 34.3
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 5.9e-41 172.6 303 34.3
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 5.9e-41 172.6 303 36.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 7.7e-41 172.2 341 34.3
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 7.7e-41 172.2 335 33.4
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 7.7e-41 172.2 307 34.5
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.0e-40 171.8 339 33.6
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.0e-40 171.8 305 36.4
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-40 171.4 303 34.7
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.7e-40 171.0 335 32.5
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-40 170.6 303 33.7
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.2e-40 170.6 332 32.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.9e-40 170.2 335 34.9
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.9e-40 170.2 303 33.3
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 3.8e-40 169.9 335 34.6
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 5.0e-40 169.5 303 34.7
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.5e-40 169.1 332 32.5
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 8.5e-40 168.7 304 34.5
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.1e-39 168.3 335 33.4
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.5e-39 167.9 304 34.9
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.9e-39 167.5 297 34.7
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.9e-39 167.5 345 32.2
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.9e-39 167.5 330 35.2
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.5e-39 167.2 303 35.3
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 3.2e-39 166.8 330 34.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.2e-39 166.8 330 33.3
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.5e-39 166.0 304 35.2
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 7.2e-39 165.6 331 35.3
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 9.4e-39 165.2 331 35.3
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 9.4e-39 165.2 330 36.1
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.2e-38 164.9 331 35.3
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.1e-38 164.1 314 33.8
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.6e-38 163.3 303 34.3
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.6e-38 163.3 303 34.3
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 4.7e-38 162.9 305 35.1
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 8.0e-38 162.2 334 35.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 8.0e-38 162.2 325 33.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.0e-37 161.8 356 32.6
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.0e-37 161.8 303 34.3
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.8e-37 161.0 337 32.9
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 1.8e-37 161.0 283 36.0
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.8e-37 161.0 326 34.4
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 5.2e-37 159.5 335 31.6
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 6.8e-37 159.1 303 32.7
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.0e-36 157.5 396 30.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 7.5e-36 155.6 283 33.9
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.7e-35 154.5 280 35.7
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 7.0e-34 149.1 304 29.9
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 9.2e-34 148.7 277 34.7
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.7e-33 147.1 299 32.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.3e-32 144.8 280 33.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 5.0e-32 142.9 277 33.2
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.3e-29 134.0 303 30.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 8.9e-29 132.1 302 31.1
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.5e-28 131.3 116 53.4
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.0e-28 131.0 305 33.1
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 2.6e-28 130.6 305 31.5
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 7.5e-28 129.0 312 30.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 9.2e-26 122.1 182 39.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 6.6e-24 115.9 243 31.3
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.3e-23 113.2 285 30.2
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.3e-21 107.5 128 42.2
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.1e-21 107.1 194 36.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 3.1e-21 107.1 243 30.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 8.9e-21 105.5 293 29.0
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.3e-19 101.7 143 40.6
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 5.4e-18 96.3 268 27.2
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 7.8e-17 92.4 112 46.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.3e-16 90.9 97 46.4
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 6.6e-16 89.4 71 62.0
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.3e-15 86.7 116 39.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 7.3e-15 85.9 71 60.6
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.6e-14 84.7 112 44.6
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.8e-13 81.3 209 28.2
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.8e-13 81.3 80 47.5
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 4.0e-13 80.1 71 49.3
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 6.4e-11 72.8 68 50.0


User provided reference genes

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