Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 0.0e+00 1490.7 763 100.0
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 6.3e-90 336.3 526 40.9
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 6.9e-89 332.8 797 35.0
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 9.1e-89 332.4 633 36.5
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.5e-88 331.6 656 34.5
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 2.6e-88 330.9 654 35.3
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 4.5e-88 330.1 657 35.3
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 4.5e-88 330.1 657 35.3
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.0e-87 328.9 634 36.3
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.3e-87 328.6 525 38.7
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.3e-87 328.6 621 36.2
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.7e-87 328.2 636 34.7
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.7e-87 328.2 621 36.6
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.7e-87 328.2 625 35.7
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 2.2e-87 327.8 654 35.5
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 2.9e-87 327.4 631 35.3
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 3.8e-87 327.0 530 38.1
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 3.8e-87 327.0 803 31.0
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 5.0e-87 326.6 658 36.5
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.0e-87 326.6 530 37.9
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 5.0e-87 326.6 628 34.9
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 6.5e-87 326.2 634 36.4
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 6.5e-87 326.2 620 35.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.5e-87 326.2 624 35.7
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 6.5e-87 326.2 628 35.4
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 8.5e-87 325.9 519 39.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 1.1e-86 325.5 622 36.3
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.1e-86 325.5 519 38.3
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 1.1e-86 325.5 634 35.2
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.4e-86 325.1 618 35.6
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.4e-86 325.1 622 36.2
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.9e-86 324.7 656 34.3
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 2.5e-86 324.3 619 35.1
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 2.5e-86 324.3 611 35.4
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 3.2e-86 323.9 619 35.1
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 3.2e-86 323.9 613 35.6
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 3.2e-86 323.9 803 30.8
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 4.2e-86 323.6 626 35.3
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 5.5e-86 323.2 620 35.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 5.5e-86 323.2 636 33.8
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 9.4e-86 322.4 622 36.0
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 9.4e-86 322.4 660 33.0
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.2e-85 322.0 619 35.4
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.6e-85 321.6 620 35.2
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.6e-85 321.6 654 34.9
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 1.6e-85 321.6 647 33.5
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 2.7e-85 320.9 627 35.2
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.7e-85 320.9 517 38.7
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 4.7e-85 320.1 624 35.3
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 7.9e-85 319.3 523 38.8
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 7.9e-85 319.3 625 35.7
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.0e-84 318.9 637 35.0
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 1.4e-84 318.5 517 37.7
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 3.9e-84 317.0 618 34.5
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 6.7e-84 316.2 629 35.6
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.1e-83 315.5 628 34.9
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 1.5e-83 315.1 661 34.0
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 9.7e-83 312.4 622 35.5
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 1.7e-82 311.6 525 37.9
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.2e-82 311.2 623 35.2
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.2e-82 311.2 521 37.0
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 4.8e-82 310.1 608 34.9
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 8.2e-82 309.3 609 34.2
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 8.2e-82 309.3 664 34.3
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 1.1e-81 308.9 646 33.6
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.1e-81 308.9 628 34.6
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 1.8e-81 308.1 528 37.9
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 2.4e-81 307.8 625 34.2
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.2e-80 305.4 524 38.2
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.6e-80 305.1 618 34.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 3.5e-80 303.9 632 35.0
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 4.5e-80 303.5 515 37.7
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 1.0e-79 302.4 525 38.1
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.7e-79 301.6 544 37.7
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 5.0e-79 300.1 448 41.1
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.0e-79 300.1 642 33.0
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.5e-78 297.7 621 32.9
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 4.2e-78 297.0 524 35.9
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 5.5e-78 296.6 635 33.7
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 9.4e-78 295.8 653 33.7
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 8.0e-77 292.7 524 35.3
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.0e-76 290.4 511 37.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.1e-75 288.9 648 33.5
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-75 288.5 627 34.6
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 5.7e-75 286.6 528 37.3
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.2e-72 278.9 625 33.0
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 2.0e-72 278.1 650 32.9
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.9e-72 276.6 559 34.3
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.7e-72 276.2 555 35.1
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.0e-71 275.8 559 34.3
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 8.5e-71 272.7 682 31.5
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 2.5e-70 271.2 555 34.6
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 6.1e-69 266.5 518 33.4
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 8.0e-69 266.2 525 35.2
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.7e-66 258.5 400 40.0
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 4.8e-66 256.9 615 30.7
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 7.0e-65 253.1 695 29.4
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.3e-63 248.8 599 31.7
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 2.2e-63 248.1 529 32.7
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.9e-62 245.0 551 32.8
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.5e-62 244.6 481 34.1
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 5.5e-62 243.4 633 30.6
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 2.7e-61 241.1 646 31.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 4.7e-61 240.4 704 29.8
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.0e-60 239.2 625 31.2
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 8.8e-60 236.1 531 31.5
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 4.4e-59 233.8 539 32.1
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.8e-58 231.1 522 32.2
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.1e-57 229.2 547 31.4
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.4e-57 228.8 466 34.1
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 4.3e-54 217.2 535 32.9
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 4.7e-53 213.8 410 35.9
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 2.4e-49 201.4 596 29.0
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.3e-47 195.7 553 32.5
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 8.9e-44 183.0 377 34.0
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 4.4e-43 180.6 620 27.1
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 5.8e-43 180.3 427 32.3
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.2e-41 174.5 509 30.1
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 2.0e-40 171.8 636 27.2
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.6e-39 166.8 349 31.8
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.9e-31 141.0 430 28.6
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 8.4e-26 123.2 164 45.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.9e-18 98.2 277 30.3
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.4e-17 95.9 171 35.7
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 9.3e-17 93.2 102 51.0
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 9.3e-17 93.2 73 63.0
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 4.6e-16 90.9 73 58.9
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 6.0e-16 90.5 73 61.6
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.0e-11 75.5 106 37.7
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.4e-11 74.7 104 38.5
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.7e-10 72.4 120 36.7
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 2.2e-10 72.0 55 63.6
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.2e-09 67.8 101 39.6
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.9e-06 58.9 64 39.1


User provided reference genes

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