Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 0.0e+00 1257.7 801 100.0
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 3.9e-18 97.8 323 28.2
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 3.3e-17 94.7 246 32.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 9.7e-17 93.2 246 30.5
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.7e-16 92.4 255 31.8
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 6.3e-16 90.5 244 29.5
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 8.2e-16 90.1 260 30.8
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.8e-15 89.0 255 31.0
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.1e-15 88.2 249 32.5
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 5.3e-15 87.4 243 32.1
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 5.3e-15 87.4 245 31.4
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.1e-15 86.7 264 30.7
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 9.1e-15 86.7 243 32.5
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.6e-14 85.9 244 31.1
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 1.6e-14 85.9 251 30.7
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 2.0e-14 85.5 235 31.9
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.0e-14 85.5 251 29.9
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 2.6e-14 85.1 244 29.5
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 2.6e-14 85.1 245 31.4
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 2.6e-14 85.1 327 26.9
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.5e-14 84.7 244 31.1
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 4.5e-14 84.3 258 30.2
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 4.5e-14 84.3 253 30.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 5.9e-14 84.0 246 30.9
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 5.9e-14 84.0 244 30.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.3e-13 82.8 217 32.3
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.3e-13 82.8 244 30.7
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.3e-13 82.8 244 30.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.3e-13 82.8 244 30.7
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.3e-13 82.8 247 29.1
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.3e-13 82.8 249 28.5
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.7e-13 82.4 254 28.3
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.7e-13 82.4 218 29.4
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.2e-13 82.0 246 28.5
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.2e-13 82.0 258 29.8
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 3.8e-13 81.3 211 30.3
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 5.0e-13 80.9 241 30.7
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 6.5e-13 80.5 211 30.3
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 6.5e-13 80.5 246 30.1
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 6.5e-13 80.5 240 30.4
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 8.5e-13 80.1 218 28.4
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.1e-12 79.7 214 31.3
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.1e-12 79.7 258 29.5
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.5e-12 79.3 257 29.2
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.9e-12 79.0 214 29.4
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.9e-12 79.0 213 31.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.9e-12 79.0 245 29.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.9e-12 79.0 246 28.0
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.9e-12 79.0 238 30.3
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.5e-12 78.6 298 23.8
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.2e-12 78.2 257 28.8
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 3.2e-12 78.2 256 30.1
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 9.4e-12 76.6 249 32.5
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.2e-11 76.3 250 30.8
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.2e-11 76.3 246 28.9
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.6e-11 75.9 203 30.5
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.6e-11 75.9 219 30.6
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.6e-11 75.9 241 27.8
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 1.6e-11 75.9 258 31.0
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 2.7e-11 75.1 240 31.2
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 3.6e-11 74.7 235 30.2
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 4.7e-11 74.3 215 29.3
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 4.7e-11 74.3 244 29.5
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 6.1e-11 73.9 241 29.5
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 8.0e-11 73.6 248 30.2
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 8.0e-11 73.6 258 29.8
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.8e-10 72.4 208 30.8
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.8e-10 72.4 242 28.9
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.8e-10 72.4 223 28.3
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 2.3e-10 72.0 242 28.9
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 2.3e-10 72.0 239 29.7
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.3e-10 72.0 246 27.6
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 3.0e-10 71.6 257 27.6
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.0e-10 71.6 213 31.0
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 6.7e-10 70.5 219 30.1
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 8.8e-10 70.1 248 29.0
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 8.8e-10 70.1 239 29.3
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.2e-09 69.7 249 27.7
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.5e-09 69.3 252 27.4
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.5e-09 69.3 242 28.1
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 2.0e-09 68.9 213 28.2
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 2.0e-09 68.9 252 27.4
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 5.7e-09 67.4 266 27.8
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 7.5e-09 67.0 252 27.0
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 7.5e-09 67.0 274 26.3
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 9.7e-09 66.6 252 27.0
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 9.7e-09 66.6 252 26.6
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.3e-08 66.2 243 28.0
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.2e-08 65.5 250 26.4
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 2.8e-08 65.1 253 26.9
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 8.2e-08 63.5 253 26.5
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 8.2e-08 63.5 290 25.5
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.1e-07 63.2 97 36.1
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.1e-07 63.2 234 29.1
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 2.4e-07 62.0 90 35.6
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.1e-07 61.6 251 27.1
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 4.1e-07 61.2 86 34.9
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.6e-06 59.3 86 38.4
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.0e-06 58.9 100 32.0
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 3.5e-06 58.2 262 23.7
Cre06.g298300 Chlamydomonas reinhardtii HOM05D005996 ORTHO05D044233 5.9e-06 57.4 152 29.6
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 7.7e-06 57.0 98 32.7


User provided reference genes

Program Settings