Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 9.7e-233 810.1 501 100.0
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 5.1e-16 90.1 174 34.5
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 2.6e-15 87.8 197 34.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 2.6e-15 87.8 174 35.1
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 3.3e-15 87.4 166 36.7
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 9.7e-15 85.9 197 33.0
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.7e-14 85.1 176 36.9
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.8e-14 84.3 179 37.4
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.8e-14 83.6 170 37.6
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 8.2e-14 82.8 167 34.7
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 1.1e-13 82.4 171 37.4
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.4e-13 82.0 175 36.0
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 2.4e-13 81.3 132 40.2
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.4e-13 81.3 160 38.1
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 2.4e-13 81.3 167 34.7
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.4e-13 81.3 170 37.6
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 3.1e-13 80.9 170 37.6
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 4.1e-13 80.5 181 39.2
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 5.3e-13 80.1 174 35.6
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 7.0e-13 79.7 165 35.8
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 7.0e-13 79.7 178 41.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 9.1e-13 79.3 175 34.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 9.1e-13 79.3 178 36.5
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.2e-12 79.0 179 35.8
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.2e-12 79.0 172 37.8
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 2.6e-12 77.8 175 34.3
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.6e-12 77.8 178 37.1
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.5e-12 77.4 178 33.7
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 4.5e-12 77.0 170 36.5
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 4.5e-12 77.0 170 35.3
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 4.5e-12 77.0 175 34.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 4.5e-12 77.0 174 36.8
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 7.7e-12 76.3 188 31.4
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.3e-11 75.5 174 33.3
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 1.3e-11 75.5 176 33.5
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.3e-11 75.5 173 32.9
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.7e-11 75.1 169 34.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 3.8e-11 73.9 132 38.6
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 5.0e-11 73.6 197 34.5
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 5.0e-11 73.6 176 34.7
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.9e-10 71.6 180 33.3
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.9e-10 71.6 179 33.5
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.5e-10 71.2 179 31.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.5e-10 71.2 311 28.6
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 2.5e-10 71.2 137 35.8
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 3.2e-10 70.9 178 32.6
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 3.2e-10 70.9 203 31.5
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 3.2e-10 70.9 179 32.4
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.2e-10 70.9 138 35.5
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 4.2e-10 70.5 177 32.2
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 5.5e-10 70.1 188 31.4
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 7.2e-10 69.7 207 31.9
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.4e-10 69.3 136 36.0
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.4e-10 69.3 136 36.8
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 9.4e-10 69.3 203 31.5
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 9.4e-10 69.3 174 31.0
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.2e-09 68.9 136 36.0
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.2e-09 68.9 178 33.7
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.2e-09 68.9 200 32.0
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.6e-09 68.6 178 34.3
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 2.1e-09 68.2 226 30.5
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.7e-09 67.8 175 33.1
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.7e-09 67.8 150 34.0
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 3.6e-09 67.4 199 31.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.6e-09 67.4 172 30.8
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 3.6e-09 67.4 178 31.5
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 4.7e-09 67.0 125 33.6
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 6.1e-09 66.6 178 31.5
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 6.1e-09 66.6 178 31.5
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 8.0e-09 66.2 184 31.0
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 8.0e-09 66.2 184 31.0
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 8.0e-09 66.2 184 31.0
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 8.0e-09 66.2 207 31.9
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 8.0e-09 66.2 178 33.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.0e-08 65.9 555 25.8
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.0e-08 65.9 170 31.2
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.0e-08 65.9 170 31.2
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.4e-08 65.5 162 31.5
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 1.4e-08 65.5 183 30.6
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.8e-08 65.1 169 33.7
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.8e-08 65.1 174 30.5
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.3e-08 64.7 107 41.1
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.3e-08 64.7 137 32.8
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 2.3e-08 64.7 210 31.0
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 4.0e-08 63.9 133 36.8
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 4.0e-08 63.9 197 28.4
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 4.0e-08 63.9 175 30.9
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 6.7e-08 63.2 210 28.6
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 8.8e-08 62.8 197 26.9
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 8.8e-08 62.8 175 30.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.6e-07 61.2 134 35.8
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.4e-07 60.5 137 32.8
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 4.4e-07 60.5 169 31.4
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 4.8e-06 57.0 140 30.7
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 4.8e-06 57.0 246 28.9


User provided reference genes

Program Settings