Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.3e-88 329.7 163 100.0
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 4.7e-35 151.8 165 49.1
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 6.1e-35 151.4 162 48.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 8.0e-35 151.0 166 48.8
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 8.0e-35 151.0 166 48.2
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 8.0e-35 151.0 163 48.5
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-34 150.2 163 47.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-34 150.2 163 47.9
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.4e-34 150.2 163 47.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.4e-34 150.2 162 48.1
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.8e-34 149.8 163 47.9
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 3.0e-34 149.1 166 48.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.0e-34 148.7 166 47.0
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 4.0e-34 148.7 161 49.7
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 4.0e-34 148.7 163 47.9
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-34 148.7 163 47.9
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 5.2e-34 148.3 162 49.4
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 5.2e-34 148.3 165 48.5
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.2e-34 148.3 166 47.6
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 5.2e-34 148.3 158 48.7
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 5.2e-34 148.3 162 47.5
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 6.8e-34 147.9 168 47.6
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 6.8e-34 147.9 163 47.9
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.8e-34 147.9 161 47.2
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.2e-33 147.1 163 49.1
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-33 147.1 163 47.2
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.2e-33 147.1 166 49.4
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.2e-33 147.1 164 48.2
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.2e-33 147.1 162 47.5
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.2e-33 147.1 163 49.1
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.5e-33 146.7 165 46.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.5e-33 146.7 163 46.6
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.0e-33 146.4 161 47.2
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.0e-33 146.4 163 46.6
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.0e-33 146.4 163 46.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.0e-33 146.4 155 47.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 2.0e-33 146.4 161 47.8
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 2.6e-33 146.0 166 47.6
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.6e-33 146.0 163 48.5
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.6e-33 146.0 163 46.6
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.6e-33 146.0 163 48.5
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 3.4e-33 145.6 161 47.8
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.4e-33 145.6 163 48.5
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 3.4e-33 145.6 163 47.2
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.4e-33 145.2 163 47.9
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 5.7e-33 144.8 161 47.2
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 5.7e-33 144.8 162 46.9
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 5.7e-33 144.8 173 44.5
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 5.7e-33 144.8 166 48.2
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 5.7e-33 144.8 166 47.0
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 7.5e-33 144.4 161 47.2
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 9.8e-33 144.1 161 47.2
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 9.8e-33 144.1 163 47.2
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 9.8e-33 144.1 161 48.4
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 9.8e-33 144.1 161 47.2
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 9.8e-33 144.1 162 46.3
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.3e-32 143.7 161 47.8
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.3e-32 143.7 161 47.8
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.3e-32 143.7 162 47.5
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.7e-32 143.3 165 46.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.7e-32 143.3 163 47.2
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.7e-32 143.3 166 47.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.7e-32 143.3 161 48.4
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.7e-32 143.3 162 46.9
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.7e-32 143.3 163 46.6
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.2e-32 142.9 164 46.3
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.2e-32 142.9 164 47.6
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.2e-32 142.9 160 47.5
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.2e-32 142.9 163 47.2
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 3.7e-32 142.1 161 47.2
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.7e-32 142.1 161 46.6
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.7e-32 142.1 164 45.1
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.8e-32 141.7 163 47.2
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.8e-32 141.7 163 47.2
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.8e-32 141.7 164 45.1
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.8e-32 141.7 164 45.1
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 4.8e-32 141.7 162 46.3
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 4.8e-32 141.7 162 45.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.8e-32 141.7 166 45.8
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 4.8e-32 141.7 163 46.0
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.3e-32 141.4 164 45.7
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 6.3e-32 141.4 163 46.6
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 8.3e-32 141.0 164 46.3
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 8.3e-32 141.0 163 46.6
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 1.1e-31 140.6 164 45.7
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.1e-31 140.6 162 46.3
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.1e-31 140.6 158 48.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-31 140.6 162 45.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.4e-31 140.2 163 45.4
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.4e-31 140.2 162 46.3
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-31 140.2 165 46.1
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.8e-31 139.8 163 46.6
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.8e-31 139.8 166 46.4
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.4e-31 139.4 164 45.7
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.1e-31 138.7 163 46.0
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 4.1e-31 138.7 165 45.5
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 4.1e-31 138.7 165 44.8
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 4.1e-31 138.7 164 46.3
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 5.4e-31 138.3 163 46.0
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 5.4e-31 138.3 162 46.3
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 5.4e-31 138.3 162 46.3
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 5.4e-31 138.3 161 46.6
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 9.1e-31 137.5 161 46.0
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 9.1e-31 137.5 161 46.0
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.1e-31 137.5 164 44.5
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 9.1e-31 137.5 165 46.7
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.2e-30 137.1 160 46.2
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 2.7e-30 136.0 164 45.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.5e-30 135.6 150 50.0
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 4.5e-30 135.2 160 45.6
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 5.9e-30 134.8 164 43.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 5.9e-30 134.8 161 46.0
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 5.9e-30 134.8 166 45.8
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 7.7e-30 134.4 162 45.1
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 7.7e-30 134.4 161 46.0
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.3e-29 133.7 160 44.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.3e-29 133.7 160 44.4
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.3e-29 133.7 156 44.9
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.7e-29 133.3 162 43.8
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 2.3e-29 132.9 157 45.2
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.9e-29 132.5 160 43.8
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 3.8e-29 132.1 160 44.4
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 6.6e-29 131.3 160 44.4
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 8.6e-29 131.0 161 44.1
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.5e-28 130.2 160 43.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.5e-28 130.2 160 43.8
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.2e-27 127.1 154 46.1
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.1e-27 126.3 193 39.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 2.8e-27 125.9 221 35.7
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.4e-26 123.6 175 41.1
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 6.8e-26 121.3 141 46.8
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.0e-25 119.8 193 35.8
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 5.7e-25 118.2 138 45.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-24 117.1 206 36.4
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 8.3e-24 114.4 141 44.0
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 8.3e-24 114.4 141 44.0
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 7.8e-22 107.8 103 51.5
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 7.3e-20 101.3 103 50.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 9.5e-20 100.9 103 48.5
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 8.0e-19 97.8 103 49.5
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.3e-18 96.3 156 37.8
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.4e-15 86.3 172 34.9
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 7.0e-15 84.7 95 47.4
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.7e-14 82.8 106 41.5
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.0e-13 80.9 77 51.9
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.6e-13 77.8 144 34.7
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.5e-12 77.0 175 32.0
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 5.6e-12 75.1 128 35.9
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.6e-11 73.6 74 47.3
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 3.1e-10 69.3 84 42.9
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.8e-10 68.2 86 45.3
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 2.6e-09 66.2 86 41.9
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.4e-09 65.9 83 44.6
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.4e-09 65.9 73 43.8
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 3.7e-08 62.4 166 31.9
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 6.4e-08 61.6 90 41.1
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 7.1e-07 58.2 112 34.8


User provided reference genes

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