Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.9e-114 415.2 209 100.0
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.6e-38 162.9 217 43.3
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 5.8e-38 161.8 217 41.5
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.2e-37 159.8 216 42.1
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.9e-36 156.8 216 41.2
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.9e-36 156.8 217 40.1
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 5.4e-36 155.2 220 43.6
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.1e-36 154.8 217 41.5
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.2e-35 154.1 216 38.4
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.6e-35 153.7 217 41.0
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.5e-35 152.5 213 40.8
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.0e-35 151.8 220 39.1
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 6.0e-35 151.8 216 43.1
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 6.0e-35 151.8 217 41.0
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 7.8e-35 151.4 215 41.4
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.8e-35 151.4 217 40.6
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.0e-34 151.0 217 40.6
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.7e-34 150.2 217 38.7
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 2.3e-34 149.8 220 40.9
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.0e-34 149.4 215 39.1
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.0e-34 149.4 217 40.1
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 3.9e-34 149.1 215 40.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.9e-34 149.1 215 39.1
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 3.9e-34 149.1 215 39.1
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 3.9e-34 149.1 216 40.3
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.6e-34 148.3 217 40.6
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 8.7e-34 147.9 215 37.2
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 8.7e-34 147.9 217 40.1
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-33 147.5 215 39.1
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.1e-33 147.5 215 38.6
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.1e-33 147.5 219 40.2
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.1e-33 147.5 217 39.6
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.1e-33 147.5 217 40.1
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-33 147.1 215 38.6
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.5e-33 147.1 217 37.3
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.5e-33 146.4 217 37.8
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.5e-33 146.4 217 40.1
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 3.3e-33 146.0 217 39.2
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 3.3e-33 146.0 220 39.1
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.3e-33 146.0 217 39.6
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 4.3e-33 145.6 222 41.9
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 4.3e-33 145.6 217 40.6
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 4.3e-33 145.6 214 38.8
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 4.3e-33 145.6 220 39.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 5.6e-33 145.2 215 37.7
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.6e-33 145.2 215 37.7
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.3e-33 144.8 218 39.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 9.6e-33 144.4 219 38.4
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.3e-32 144.1 216 37.0
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.6e-32 143.7 217 39.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 2.1e-32 143.3 217 39.6
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.1e-32 143.3 217 38.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.1e-32 143.3 215 39.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.8e-32 142.9 216 40.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 2.8e-32 142.9 217 37.8
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 3.6e-32 142.5 220 40.0
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.6e-32 142.5 215 38.1
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 4.8e-32 142.1 217 37.8
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 4.8e-32 142.1 217 39.2
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 4.8e-32 142.1 219 38.8
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.1e-32 141.4 217 38.2
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 8.1e-32 141.4 217 37.3
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 8.1e-32 141.4 220 40.0
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.4e-31 140.6 217 39.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.8e-31 140.2 217 38.2
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.8e-31 140.2 220 38.2
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.4e-31 139.8 214 38.8
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.4e-31 139.8 220 39.1
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.4e-31 139.8 220 40.5
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 2.4e-31 139.8 231 40.3
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.0e-31 139.0 220 39.5
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 4.0e-31 139.0 209 38.8
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 9.0e-31 137.9 220 39.5
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.4e-30 136.0 200 39.5
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 7.6e-30 134.8 210 39.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.2e-29 133.3 256 35.9
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.2e-29 133.3 198 38.9
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 6.4e-29 131.7 208 39.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.4e-29 131.7 208 39.9
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.4e-29 131.3 204 38.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-28 131.0 200 38.5
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.1e-28 131.0 201 36.3
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-28 131.0 208 39.9
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.1e-28 131.0 217 38.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.1e-28 131.0 219 41.1
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.4e-28 129.8 208 39.4
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-28 129.8 209 39.7
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-28 129.8 209 39.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.2e-28 129.4 201 38.3
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.1e-28 128.3 231 34.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 9.3e-28 127.9 257 32.7
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.3e-28 127.9 204 39.7
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.6e-27 127.1 212 36.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.7e-27 126.3 218 35.8
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.5e-27 125.9 202 39.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 7.9e-27 124.8 214 36.4
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.8e-26 123.6 209 34.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.3e-26 123.2 255 31.8
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 3.9e-26 122.5 202 37.1
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 6.7e-26 121.7 350 29.4
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.1e-25 120.9 205 37.6
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 1.5e-25 120.6 249 34.9
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.9e-25 120.2 164 39.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.1e-24 116.7 150 40.0
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.8e-24 116.3 214 34.1
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.7e-24 115.9 251 32.7
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.1e-24 114.8 202 35.6
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.4e-23 113.2 209 35.4
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 2.4e-23 113.2 124 46.8
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 4.0e-23 112.5 219 33.8
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.0e-23 112.5 187 37.4
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.3e-23 112.1 272 31.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 5.8e-22 108.6 191 38.2
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.3e-21 107.5 147 38.8
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 6.5e-21 105.1 117 47.0
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.2e-19 100.9 143 38.5
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.6e-19 100.5 180 35.6
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 2.1e-19 100.1 222 33.3
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 5.7e-17 92.0 166 32.5
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-16 90.9 224 32.6
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.8e-16 89.7 141 35.5
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 4.8e-16 89.0 123 42.3
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.5e-14 84.0 82 51.2
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 3.4e-14 82.8 82 50.0
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.8e-14 82.0 107 39.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.8e-14 82.0 153 32.0
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 2.9e-13 79.7 125 36.8
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 5.5e-12 75.5 91 44.0
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 9.3e-12 74.7 91 45.1
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-10 70.5 187 31.6
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.5e-09 66.6 217 28.1
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.3e-09 66.2 127 33.9
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.6e-08 63.9 115 34.8
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 6.3e-08 62.0 119 34.5
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.1e-07 61.2 138 30.4
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.4e-06 56.2 109 29.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.7e-06 55.1 109 29.4


User provided reference genes

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