Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 0.0e+00 2196.0 1471 100.0
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 2.7e-20 105.9 352 26.7
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 5.5e-18 98.2 272 33.1
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 7.2e-18 97.8 351 27.9
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.2e-17 97.1 328 28.0
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.2e-17 97.1 328 28.0
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 1.6e-17 96.7 343 26.8
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 2.1e-17 96.3 342 29.2
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 2.1e-17 96.3 231 35.5
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 2.8e-17 95.9 353 26.9
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 6.1e-17 94.7 239 33.1
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 6.1e-17 94.7 229 34.9
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 6.1e-17 94.7 346 26.9
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 6.1e-17 94.7 230 36.1
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 8.0e-17 94.4 347 25.6
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 8.0e-17 94.4 328 27.7
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 8.0e-17 94.4 328 28.7
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 1.0e-16 94.0 240 33.8
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 1.4e-16 93.6 374 27.0
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 1.8e-16 93.2 357 26.9
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 1.8e-16 93.2 229 34.1
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 1.8e-16 93.2 238 32.8
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 2.3e-16 92.8 363 25.9
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.3e-16 92.8 352 27.0
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 3.0e-16 92.4 350 29.1
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 3.0e-16 92.4 353 25.8
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 4.0e-16 92.0 332 27.4
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 4.0e-16 92.0 266 31.6
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 4.0e-16 92.0 229 34.5
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 4.0e-16 92.0 352 26.1
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 5.2e-16 91.7 347 25.4
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 2.0e-15 89.7 581 26.0
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 2.6e-15 89.4 375 25.9
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 2.6e-15 89.4 278 32.4
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 2.6e-15 89.4 369 26.6
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 3.4e-15 89.0 356 26.1
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 3.4e-15 89.0 347 25.1
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 4.4e-15 88.6 355 25.9
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 5.7e-15 88.2 244 31.6
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 5.7e-15 88.2 356 25.6
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 5.7e-15 88.2 352 25.6
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 7.5e-15 87.8 246 31.7
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 9.8e-15 87.4 338 26.9
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 1.3e-14 87.0 272 27.2
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 1.3e-14 87.0 348 25.9
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 1.3e-14 87.0 368 26.9
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 1.3e-14 87.0 241 29.5
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 1.7e-14 86.7 554 24.0
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 1.7e-14 86.7 242 30.6
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 2.2e-14 86.3 348 26.1
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 2.2e-14 86.3 362 25.7
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 2.9e-14 85.9 342 26.3
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 2.9e-14 85.9 398 26.9
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 2.9e-14 85.9 354 27.1
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.9e-14 85.9 241 32.4
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 2.9e-14 85.9 355 26.2
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 3.7e-14 85.5 282 29.4
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 4.9e-14 85.1 358 26.5
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 4.9e-14 85.1 242 32.2
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 8.3e-14 84.3 352 26.7
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 8.3e-14 84.3 241 32.4
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 8.3e-14 84.3 354 25.7
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 8.3e-14 84.3 354 25.1
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 8.3e-14 84.3 353 26.6
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 8.3e-14 84.3 255 31.8
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.1e-13 84.0 238 32.4
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 1.1e-13 84.0 347 25.4
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 1.4e-13 83.6 358 26.0
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 1.4e-13 83.6 350 25.4
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 1.8e-13 83.2 341 25.5
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.8e-13 83.2 353 25.5
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 2.4e-13 82.8 244 31.1
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 2.4e-13 82.8 354 26.3
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 2.4e-13 82.8 241 32.0
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 2.4e-13 82.8 352 26.4
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 3.2e-13 82.4 353 24.6
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.2e-13 82.4 240 29.6
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.2e-13 82.4 240 29.6
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 3.2e-13 82.4 245 29.4
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 3.2e-13 82.4 349 26.1
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 3.2e-13 82.4 349 27.8
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 4.1e-13 82.0 352 25.3
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 7.0e-13 81.3 355 24.8
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 9.2e-13 80.9 354 24.6
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.2e-12 80.5 356 26.7
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 1.2e-12 80.5 245 29.0
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 1.2e-12 80.5 352 26.1
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 1.2e-12 80.5 170 37.1
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.6e-12 80.1 354 25.4
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 1.6e-12 80.1 352 26.4
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 1.6e-12 80.1 236 30.9
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 2.7e-12 79.3 400 23.5
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 2.7e-12 79.3 400 23.5
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 2.7e-12 79.3 383 27.7
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 3.5e-12 79.0 244 28.7
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 3.5e-12 79.0 364 25.5
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 4.6e-12 78.6 352 28.1
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 7.8e-12 77.8 352 25.9
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 7.8e-12 77.8 238 31.5
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 1.0e-11 77.4 350 25.1
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 1.7e-11 76.6 352 25.3
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 2.9e-11 75.9 359 24.8
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 3.9e-11 75.5 356 23.9
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 5.0e-11 75.1 235 27.7
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 8.6e-11 74.3 250 28.4
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 1.9e-10 73.2 242 28.5
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 1.9e-10 73.2 348 24.7
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 2.5e-10 72.8 329 27.7
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 3.3e-10 72.4 218 28.9
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 1.2e-09 70.5 242 28.1
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 6.1e-09 68.2 278 26.3
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 6.1e-09 68.2 241 27.4
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.0e-08 67.4 223 28.7
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 8.9e-08 64.3 115 38.3
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 1.2e-07 63.9 265 26.8
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.6e-07 62.8 421 24.0
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 4.4e-07 62.0 234 27.4
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 5.8e-07 61.6 74 47.3
Cre07.g347550 Chlamydomonas reinhardtii HOM05D004094 ORTHO05D004601 9.8e-07 60.8 59 52.5
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 9.8e-07 60.8 52 55.8
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 1.3e-06 60.5 52 57.7
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 1.7e-06 60.1 135 36.3
Peaxi162Scf00047g01035 Petunia axillaris HOM05D004618 ORTHO05D005318 2.9e-06 59.3 167 27.5
MCO11G336 Micromonas commoda HOM05D004258 ORTHO05D005219 4.9e-06 58.5 46 50.0
Psat6g048480 Pisum sativum HOM05D004618 ORTHO05D005318 4.9e-06 58.5 168 26.2
Manes.15G051466 Manihot esculenta HOM05D004618 ORTHO05D005318 8.3e-06 57.8 169 25.4
Nitab4.5_0002412g0020 Nicotiana tabacum HOM05D004618 ORTHO05D005318 8.3e-06 57.8 167 26.3


User provided reference genes

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