Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 3.3e-156 555.1 290 100.0
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.8e-12 75.9 395 25.6
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.7e-11 74.3 258 27.1
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 1.9e-10 70.9 271 27.3
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.2e-10 70.1 391 23.8
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 3.2e-10 70.1 256 25.8
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.2e-09 68.2 391 23.0
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.2e-09 68.2 260 25.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.2e-09 68.2 398 24.4
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.7e-09 67.0 260 25.0
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.7e-09 67.0 393 24.2
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 6.0e-09 65.9 259 24.7
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.0e-08 65.1 255 25.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.0e-08 65.1 391 22.5
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.0e-08 65.1 204 28.4
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.0e-08 65.1 392 23.2
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.0e-08 65.1 299 24.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.3e-08 64.7 400 22.8
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.3e-08 63.9 260 24.6
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.3e-08 63.9 257 24.5
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 3.0e-08 63.5 400 22.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.0e-08 63.5 388 23.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.9e-08 63.2 359 22.0
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.1e-08 62.8 359 22.0
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 6.7e-08 62.4 397 23.4
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 6.7e-08 62.4 300 26.0
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 6.7e-08 62.4 430 23.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.1e-07 61.6 399 23.1
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.1e-07 61.6 398 22.4
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.1e-07 61.6 256 25.8
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.5e-07 61.2 254 25.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.5e-07 61.2 376 23.7
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.5e-07 61.2 382 26.2
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.9e-07 60.8 272 25.0
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.9e-07 60.8 394 22.6
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.9e-07 60.8 254 26.8
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-07 60.5 401 22.9
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.3e-07 60.1 257 23.0
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.3e-07 60.1 359 21.7
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.3e-07 60.1 395 22.0
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 4.3e-07 59.7 190 28.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 4.3e-07 59.7 383 23.2
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 4.3e-07 59.7 401 23.2
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.3e-07 59.7 221 28.1
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 4.3e-07 59.7 254 26.0
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 5.6e-07 59.3 400 22.2
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 7.4e-07 58.9 393 22.1
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.3e-06 58.2 387 23.0
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.3e-06 58.2 257 25.7
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.6e-06 57.8 403 21.8
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.6e-06 57.8 403 21.8
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 2.8e-06 57.0 400 22.0
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.8e-06 57.0 355 21.7
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.8e-06 57.0 259 24.3
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 4.8e-06 56.2 347 24.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.8e-06 56.2 418 21.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 6.2e-06 55.8 393 21.6
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 6.2e-06 55.8 410 22.2
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 8.1e-06 55.5 353 22.9
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 8.1e-06 55.5 254 22.0


User provided reference genes

Program Settings