Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 0.0e+00 2003.4 1201 100.0
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.7e-20 105.1 289 31.8
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.4e-19 103.2 279 36.6
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 3.1e-19 102.1 324 31.5
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.6e-18 99.8 323 30.7
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.0e-18 99.4 323 30.7
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.0e-18 99.4 294 32.3
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 3.5e-18 98.6 366 29.8
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 7.7e-18 97.4 323 29.7
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.0e-17 97.1 294 31.3
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.3e-17 96.7 286 33.6
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 2.9e-17 95.5 398 28.4
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.8e-17 95.1 364 30.2
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 5.0e-17 94.7 324 29.9
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 5.0e-17 94.7 321 28.0
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.0e-17 94.7 365 29.9
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 6.5e-17 94.4 315 30.8
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 6.5e-17 94.4 364 30.2
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 8.5e-17 94.0 325 31.4
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 8.5e-17 94.0 284 33.5
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.1e-16 93.6 263 31.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.5e-16 93.2 367 30.0
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.5e-16 93.2 325 30.8
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.9e-16 92.8 284 33.5
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 3.2e-16 92.0 322 27.3
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 4.2e-16 91.7 327 31.5
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 4.2e-16 91.7 365 27.9
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 4.2e-16 91.7 360 27.8
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 4.2e-16 91.7 260 31.9
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 5.5e-16 91.3 298 31.2
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 5.5e-16 91.3 372 28.5
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.2e-16 90.9 348 25.9
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 9.4e-16 90.5 326 30.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 9.4e-16 90.5 324 29.3
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 9.4e-16 90.5 286 33.6
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-15 90.1 364 29.9
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 2.1e-15 89.4 313 29.4
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 2.1e-15 89.4 176 37.5
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.1e-15 89.4 364 29.7
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.1e-15 89.4 332 30.4
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.1e-15 89.4 151 41.1
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.7e-15 89.0 363 26.7
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.7e-15 89.0 260 32.7
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 2.7e-15 89.0 149 41.6
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 2.7e-15 89.0 150 38.0
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 4.7e-15 88.2 297 30.0
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 6.1e-15 87.8 364 28.8
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.0e-14 87.0 178 37.6
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.0e-14 87.0 296 31.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.0e-14 87.0 307 30.6
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.8e-14 86.3 321 26.5
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.8e-14 86.3 284 31.3
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.3e-14 85.9 303 29.7
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.3e-14 85.9 283 29.3
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.3e-14 85.9 354 26.6
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 3.0e-14 85.5 149 37.6
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.0e-14 85.5 150 39.3
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-14 85.5 316 30.7
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 3.0e-14 85.5 291 28.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 3.0e-14 85.5 190 38.9
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 4.0e-14 85.1 365 28.5
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 4.0e-14 85.1 316 27.8
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 4.0e-14 85.1 150 39.3
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 4.0e-14 85.1 299 31.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 4.0e-14 85.1 298 29.5
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-14 84.7 189 36.5
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 6.8e-14 84.3 151 37.7
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 6.8e-14 84.3 284 31.3
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 6.8e-14 84.3 297 29.3
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 8.8e-14 84.0 354 29.4
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 8.8e-14 84.0 150 40.0
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 8.8e-14 84.0 296 29.1
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 8.8e-14 84.0 334 28.1
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.2e-13 83.6 335 30.4
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.2e-13 83.6 291 28.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.2e-13 83.6 307 28.7
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.2e-13 83.6 321 29.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.2e-13 83.6 360 26.4
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.5e-13 83.2 151 37.7
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.5e-13 83.2 323 29.4
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.0e-13 82.8 307 30.0
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.6e-13 82.4 339 28.6
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 3.4e-13 82.0 321 28.3
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.4e-13 82.0 321 28.3
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.4e-13 82.0 391 28.1
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.4e-13 82.0 297 31.3
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 3.4e-13 82.0 151 36.4
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 4.4e-13 81.6 321 28.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 4.4e-13 81.6 321 28.3
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 4.4e-13 81.6 151 37.7
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 7.5e-13 80.9 151 37.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 9.8e-13 80.5 297 29.0
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 9.8e-13 80.5 297 29.0
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.3e-12 80.1 295 28.5
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 1.7e-12 79.7 320 28.1
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.8e-12 79.0 297 28.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 2.8e-12 79.0 214 35.0
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 4.9e-12 78.2 292 27.4
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 4.9e-12 78.2 293 27.3
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 4.9e-12 78.2 292 28.8
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.3e-12 77.4 181 35.9
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.4e-11 76.6 151 35.8
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.8e-11 76.3 356 29.5
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 3.1e-11 75.5 319 26.3
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.4e-11 74.7 340 27.4
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 5.4e-11 74.7 321 27.1
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.2e-11 73.9 149 34.9
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 1.6e-10 73.2 167 38.3
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.7e-10 72.4 388 27.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.5e-10 72.0 126 39.7
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.5e-10 72.0 130 40.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 3.5e-10 72.0 292 27.7
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 3.5e-10 72.0 134 39.6
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 3.5e-10 72.0 134 39.6
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 5.9e-10 71.2 130 37.7
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 2.3e-09 69.3 330 27.0
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.8e-09 68.6 306 28.8
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 3.8e-09 68.6 318 28.3
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 8.6e-09 67.4 270 29.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 1.5e-08 66.6 318 25.5
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 3.3e-08 65.5 359 25.6
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 5.6e-08 64.7 297 27.6
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.2e-07 63.5 257 30.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.1e-07 62.8 253 28.1
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.7e-07 61.6 154 31.8
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 8.0e-07 60.8 257 29.6
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 8.0e-07 60.8 123 35.0
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.0e-06 58.5 340 27.1
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 8.9e-06 57.4 340 27.1


User provided reference genes

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