Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 5.1e-72 274.2 133 100.0
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 5.5e-18 94.7 115 44.3
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.6e-17 93.2 115 42.6
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 2.1e-17 92.8 115 41.7
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 2.1e-17 92.8 117 41.9
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 3.6e-17 92.0 115 42.6
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 3.6e-17 92.0 115 41.7
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 3.6e-17 92.0 115 42.6
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 3.6e-17 92.0 115 40.9
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 3.6e-17 92.0 115 41.7
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 6.1e-17 91.3 115 41.7
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 6.1e-17 91.3 115 41.7
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 8.0e-17 90.9 115 41.7
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 8.0e-17 90.9 115 41.7
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 8.0e-17 90.9 115 41.7
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 1.4e-16 90.1 115 40.9
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 1.4e-16 90.1 112 42.0
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 1.4e-16 90.1 115 40.9
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 1.8e-16 89.7 115 42.6
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 1.8e-16 89.7 115 41.7
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.3e-16 89.4 115 41.7
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 2.3e-16 89.4 119 39.5
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 2.3e-16 89.4 115 40.9
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 3.0e-16 89.0 115 41.7
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.0e-16 88.6 115 41.7
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.0e-16 88.6 115 41.7
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.0e-16 88.6 115 41.7
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.0e-16 88.6 115 41.7
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 4.0e-16 88.6 119 38.7
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.0e-16 88.6 115 40.0
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 4.0e-16 88.6 119 40.3
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 5.2e-16 88.2 115 39.1
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 5.2e-16 88.2 115 40.0
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 5.2e-16 88.2 115 40.9
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 5.2e-16 88.2 115 40.9
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 5.2e-16 88.2 114 42.1
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 6.8e-16 87.8 115 40.0
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 6.8e-16 87.8 115 40.0
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 6.8e-16 87.8 119 40.3
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 8.9e-16 87.4 115 40.0
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.9e-16 87.4 115 41.7
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 41.7
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 41.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 39.1
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 40.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 40.9
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 40.0
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 39.1
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.2e-15 87.0 115 39.1
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 1.5e-15 86.7 115 40.0
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 1.5e-15 86.7 115 40.0
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 1.5e-15 86.7 115 40.0
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 1.5e-15 86.7 115 39.1
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 38.3
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 38.3
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 38.3
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.0
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 2.0e-15 86.3 115 40.0
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 2.0e-15 86.3 115 40.0
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.0
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.0
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 39.1
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.9
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.9
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.0
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.9
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 2.0e-15 86.3 115 40.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 3.4e-15 85.5 115 39.1
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 3.4e-15 85.5 115 40.0
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 3.4e-15 85.5 119 38.7
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 39.1
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 39.1
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 39.1
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 39.1
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 39.1
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 39.1
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 4.4e-15 85.1 115 40.0
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 5.7e-15 84.7 115 41.7
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 5.7e-15 84.7 115 40.0
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 7.5e-15 84.3 119 37.8
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 7.5e-15 84.3 123 38.2
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 7.5e-15 84.3 115 38.3
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 7.5e-15 84.3 115 39.1
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 7.5e-15 84.3 117 38.5
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 9.8e-15 84.0 112 42.9
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 9.8e-15 84.0 115 39.1
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 9.8e-15 84.0 115 40.0
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 9.8e-15 84.0 115 40.0
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 9.8e-15 84.0 115 37.4
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 1.3e-14 83.6 115 39.1
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 1.7e-14 83.2 115 39.1
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 1.7e-14 83.2 115 39.1
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 1.7e-14 83.2 117 37.6
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 1.7e-14 83.2 117 37.6
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 1.7e-14 83.2 115 40.0
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 2.2e-14 82.8 115 40.0
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-14 82.8 115 39.1
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-14 82.8 115 39.1
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 2.2e-14 82.8 115 39.1
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 2.2e-14 82.8 119 37.8
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 2.8e-14 82.4 115 37.4
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 2.8e-14 82.4 115 40.9
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.8e-14 82.4 115 36.5
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 2.8e-14 82.4 117 39.3
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 2.8e-14 82.4 115 38.3
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 4.9e-14 81.6 115 40.0
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 4.9e-14 81.6 113 39.8
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.9e-14 81.6 115 38.3
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 4.9e-14 81.6 115 37.4
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 4.9e-14 81.6 112 42.0
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 6.3e-14 81.3 119 37.8
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 6.3e-14 81.3 113 39.8
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 8.3e-14 80.9 115 35.7
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 8.3e-14 80.9 115 36.5
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 8.3e-14 80.9 115 37.4
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.1e-13 80.5 115 38.3
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 1.1e-13 80.5 115 38.3
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-13 80.5 117 35.9
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.4e-13 80.1 107 40.2
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.8e-13 79.7 115 39.1
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.4e-13 79.3 119 37.0
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.2e-13 79.0 112 38.4
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.1e-13 78.6 112 39.3
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 7.0e-13 77.8 112 39.3
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 5.9e-12 74.7 115 35.7
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 6.6e-11 71.2 139 34.5
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 8.6e-11 70.9 115 32.2
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 7.3e-10 67.8 133 32.3
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 1.6e-09 66.6 62 46.8
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.1e-09 66.2 70 41.4
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 3.6e-09 65.5 80 40.0
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 6.1e-09 64.7 114 36.0
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 6.1e-09 64.7 114 36.0
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 8.0e-09 64.3 62 45.2
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 1.8e-08 63.2 62 43.5
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 3.1e-08 62.4 80 33.8
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 5.2e-08 61.6 114 35.1
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 6.8e-08 61.2 117 32.5
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 8.9e-08 60.8 87 37.9
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.2e-07 60.5 90 38.9
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 1.5e-07 60.1 62 41.9
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.4e-07 58.5 90 36.7
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 5.8e-07 58.2 86 37.2
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 2.9e-06 55.8 86 36.0
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.4e-06 54.7 87 35.6
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.4e-06 54.7 86 37.2


User provided reference genes

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