Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 3.6e-88 328.2 162 100.0
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 2.0e-14 83.2 146 37.0
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 2.7e-14 82.8 150 36.7
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 2.7e-14 82.8 150 37.3
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 2.7e-14 82.8 150 37.3
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 2.7e-14 82.8 150 37.3
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 2.7e-14 82.8 146 37.0
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 3.5e-14 82.4 150 37.3
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 3.5e-14 82.4 150 37.3
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 7.7e-14 81.3 150 37.3
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 7.7e-14 81.3 150 37.3
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 1.0e-13 80.9 150 37.3
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 2.2e-13 79.7 150 37.3
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 3.8e-13 79.0 146 35.6
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 3.8e-13 79.0 146 35.6
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 3.8e-13 79.0 150 36.0
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 6.5e-13 78.2 150 36.7
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 6.5e-13 78.2 150 36.7
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 6.5e-13 78.2 150 36.7
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 6.5e-13 78.2 150 36.7
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 8.5e-13 77.8 146 35.6
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 8.5e-13 77.8 146 36.3
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.1e-12 77.4 146 36.3
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 1.1e-12 77.4 147 35.4
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 1.5e-12 77.0 146 35.6
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 1.5e-12 77.0 146 35.6
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 1.5e-12 77.0 90 45.6
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 1.5e-12 77.0 147 34.7
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 1.9e-12 76.6 147 39.5
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 2.5e-12 76.3 146 36.3
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 2.5e-12 76.3 146 35.6
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 2.5e-12 76.3 92 45.7
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 3.2e-12 75.9 150 36.0
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 3.2e-12 75.9 146 36.3
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 3.2e-12 75.9 158 35.4
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 3.2e-12 75.9 147 34.7
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 4.2e-12 75.5 150 34.0
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 4.2e-12 75.5 146 34.2
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 4.2e-12 75.5 146 36.3
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 4.2e-12 75.5 146 37.7
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 5.5e-12 75.1 146 35.6
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 5.5e-12 75.1 146 35.6
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 5.5e-12 75.1 146 35.6
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 7.2e-12 74.7 146 35.6
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 9.5e-12 74.3 149 32.9
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 9.5e-12 74.3 149 32.9
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 9.5e-12 74.3 86 46.5
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 1.2e-11 73.9 146 35.6
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.2e-11 73.9 146 34.9
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.2e-11 73.9 148 35.8
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 1.6e-11 73.6 147 35.4
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 1.6e-11 73.6 147 36.1
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 1.6e-11 73.6 147 33.3
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 1.6e-11 73.6 146 35.6
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 2.1e-11 73.2 70 52.9
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 2.1e-11 73.2 95 44.2
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 2.1e-11 73.2 91 44.0
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 2.1e-11 73.2 70 54.3
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 2.7e-11 72.8 153 36.6
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 3.6e-11 72.4 149 34.9
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 3.6e-11 72.4 146 35.6
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 3.6e-11 72.4 90 43.3
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 3.6e-11 72.4 84 45.2
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 3.6e-11 72.4 146 34.2
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 3.6e-11 72.4 70 52.9
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 4.7e-11 72.0 146 35.6
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 4.7e-11 72.0 73 49.3
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 4.7e-11 72.0 146 34.2
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 6.1e-11 71.6 146 34.9
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 6.1e-11 71.6 160 35.0
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 6.1e-11 71.6 146 34.2
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 6.1e-11 71.6 146 37.7
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 8.0e-11 71.2 146 36.3
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 8.0e-11 71.2 146 33.6
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 8.0e-11 71.2 146 33.6
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 1.0e-10 70.9 111 38.7
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.0e-10 70.9 146 33.6
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 1.0e-10 70.9 146 35.6
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 1.4e-10 70.5 146 34.2
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 1.4e-10 70.5 146 34.9
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 1.4e-10 70.5 146 34.9
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 1.8e-10 70.1 78 44.9
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 1.8e-10 70.1 146 33.6
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 2.3e-10 69.7 84 45.2
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 2.3e-10 69.7 84 44.0
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 2.3e-10 69.7 70 50.0
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 3.0e-10 69.3 147 35.4
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 5.2e-10 68.6 74 47.3
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 6.8e-10 68.2 70 48.6
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 6.8e-10 68.2 70 48.6
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 8.8e-10 67.8 146 34.2
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 1.5e-09 67.0 146 33.6
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 2.6e-09 66.2 70 47.1
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.6e-09 66.2 146 32.9
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 2.6e-09 66.2 146 33.6
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 3.4e-09 65.9 146 32.9
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.4e-09 65.9 146 32.9
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.4e-09 65.9 146 32.9
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.4e-09 65.9 146 32.9
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 3.4e-09 65.9 146 32.9
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 3.4e-09 65.9 146 33.6
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 4.4e-09 65.5 146 32.2
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 4.4e-09 65.5 70 47.1
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 9.8e-09 64.3 76 44.7
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 1.3e-08 63.9 146 32.2
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 2.4e-07 59.7 150 34.0
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 9.2e-07 57.8 147 31.3
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 9.2e-07 57.8 147 31.3


User provided reference genes

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