Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G536 Micromonas commoda HOM05D006256 ORTHO05D007833 3.0e-58 228.4 124 100.0
Oeu010284.1 Olea europaea HOM05D006256 ORTHO05D007833 8.8e-10 67.4 71 53.5
Actinidia38660 Actinidia chinensis HOM05D006256 ORTHO05D007833 1.2e-09 67.0 84 46.4
MSTRG.10713 Avicennia marina HOM05D006256 ORTHO05D007833 1.5e-09 66.6 80 48.8
CSS0035436 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 1.5e-09 66.6 79 48.1
Migut.K00301 Erythranthe guttata HOM05D006256 ORTHO05D007833 1.5e-09 66.6 96 42.7
Mapoly0027s0042 Marchantia polymorpha HOM05D006256 ORTHO05D007833 2.6e-09 65.9 98 42.9
SalBow1G2070 Salvia bowleyana HOM05D006256 ORTHO05D007833 3.4e-09 65.5 71 50.7
Aqoxy7G03320 Aquilegia oxysepala HOM05D006256 ORTHO05D007833 4.4e-09 65.1 77 48.1
Migut.J01392 Erythranthe guttata HOM05D006256 ORTHO05D007833 4.4e-09 65.1 71 50.7
EL10Ac8g18906 Beta vulgaris HOM05D006256 ORTHO05D007833 7.5e-09 64.3 97 41.2
CSS0023303 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 9.8e-09 63.9 73 50.7
Eucgr.C02515 Eucalyptus grandis HOM05D006256 ORTHO05D007833 9.8e-09 63.9 83 45.8
Eucgr.L01548 Eucalyptus grandis HOM05D006256 ORTHO05D007833 9.8e-09 63.9 83 45.8
Cc06_g14490 Coffea canephora HOM05D006256 ORTHO05D007833 1.3e-08 63.5 91 44.0
Peaxi162Scf00563g00414 Petunia axillaris HOM05D006256 ORTHO05D007833 1.3e-08 63.5 71 50.7
Os06g0647100 Oryza sativa ssp. japonica HOM05D006256 ORTHO05D007833 2.2e-08 62.8 94 42.6
Zm00001eb386680 Zea mays HOM05D006256 ORTHO05D007833 2.2e-08 62.8 113 38.9
Ciclev10009792m.g Citrus clementina HOM05D006256 ORTHO05D007833 2.8e-08 62.4 64 50.0
Nitab4.5_0001036g0150 Nicotiana tabacum HOM05D006256 ORTHO05D007833 2.8e-08 62.4 71 49.3
Solyc07g006000.3 Solanum lycopersicum HOM05D006256 ORTHO05D007833 2.8e-08 62.4 83 47.0
Sopen07g002140 Solanum pennellii HOM05D006256 ORTHO05D007833 2.8e-08 62.4 83 47.0
PGSC0003DMG400011211 Solanum tuberosum HOM05D006256 ORTHO05D007833 2.8e-08 62.4 83 47.0
MBI15_g35737_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 3.7e-08 62.0 72 48.6
SGA_v2.0_scaffold222G42778 Striga asiatica HOM05D006256 ORTHO05D007833 3.7e-08 62.0 71 49.3
vmacro06052 Vaccinium macrocarpon HOM05D006256 ORTHO05D007833 3.7e-08 62.0 118 36.4
AUR62025373 Chenopodium quinoa HOM05D006256 ORTHO05D007833 4.9e-08 61.6 73 47.9
AUR62028378 Chenopodium quinoa HOM05D006256 ORTHO05D007833 4.9e-08 61.6 73 47.9
Ah.09g228670 Amaranthus hybridus HOM05D006256 ORTHO05D007833 8.3e-08 60.8 64 51.6
Nitab4.5_0006744g0050 Nicotiana tabacum HOM05D006256 ORTHO05D007833 8.3e-08 60.8 83 45.8
PGR102G0560 Punica granatum HOM05D006256 ORTHO05D007833 8.3e-08 60.8 64 50.0
Duzib187G1001 Durio zibethinus HOM05D006256 ORTHO05D007833 1.1e-07 60.5 77 45.5
Hma1.2p1_1084F.1_g255300 Hydrangea macrophylla HOM05D006256 ORTHO05D007833 1.1e-07 60.5 83 45.8
Sabra18G0088200 Salix brachista HOM05D006256 ORTHO05D007833 1.1e-07 60.5 64 48.4
TAR383G0166 Trochodendron aralioides HOM05D006256 ORTHO05D007833 1.1e-07 60.5 73 45.2
AL4G14180 Arabidopsis lyrata HOM05D006256 ORTHO05D007833 1.4e-07 60.1 107 40.2
HanXRQChr10g0307761 Helianthus annuus HOM05D006256 ORTHO05D007833 1.4e-07 60.1 92 40.2
PSO170G3639 Papaver somniferum HOM05D006256 ORTHO05D007833 1.4e-07 60.1 72 47.2
Cpa.g.sc199.16 Carica papaya HOM05D006256 ORTHO05D007833 1.8e-07 59.7 64 48.4
Thecc.09G154100 Theobroma cacao HOM05D006256 ORTHO05D007833 1.8e-07 59.7 64 48.4
Dinv43283 Davidia involucrata HOM05D006256 ORTHO05D007833 2.4e-07 59.3 73 46.6
Glyma.02G206700 Glycine max HOM05D006256 ORTHO05D007833 2.4e-07 59.3 64 48.4
Glyma.17G071200 Glycine max HOM05D006256 ORTHO05D007833 2.4e-07 59.3 64 48.4
Lj4g0007171 Lotus japonicus HOM05D006256 ORTHO05D007833 2.4e-07 59.3 73 45.2
PSO063G2398 Papaver somniferum HOM05D006256 ORTHO05D007833 2.4e-07 59.3 77 45.5
Atru.chr7.353 Acer truncatum HOM05D006256 ORTHO05D007833 3.1e-07 58.9 64 46.9
BolC4t26923H Brassica oleracea HOM05D006256 ORTHO05D007833 3.1e-07 58.9 64 46.9
Gorai.004G106500 Gossypium raimondii HOM05D006256 ORTHO05D007833 3.1e-07 58.9 93 39.8
Nn2g12458 Nelumbo nucifera HOM05D006256 ORTHO05D007833 3.1e-07 58.9 64 46.9
Sp4g02990 Schrenkiella parvula HOM05D006256 ORTHO05D007833 3.1e-07 58.9 64 46.9
TWI32G1056 Tripterygium wilfordii HOM05D006256 ORTHO05D007833 3.1e-07 58.9 96 39.6
HPP92_010352 Vanilla planifolia HOM05D006256 ORTHO05D007833 3.1e-07 58.9 74 44.6
Aa31LG7G12680 Aethionema arabicum HOM05D006256 ORTHO05D007833 4.1e-07 58.5 64 46.9
VMungo1215G1943 Vigna mungo HOM05D006256 ORTHO05D007833 4.1e-07 58.5 64 48.4
Carub.0004s0326 Capsella rubella HOM05D006256 ORTHO05D007833 5.4e-07 58.2 91 41.8
CARHR118260 Cardamine hirsuta HOM05D006256 ORTHO05D007833 5.4e-07 58.2 102 40.2
CsaV3_1G029200 Cucumis sativus L. HOM05D006256 ORTHO05D007833 5.4e-07 58.2 100 38.0
MD04G1052200 Malus domestica HOM05D006256 ORTHO05D007833 5.4e-07 58.2 79 41.8
Gohir.D08G098900 Gossypium hirsutum HOM05D006256 ORTHO05D007833 7.0e-07 57.8 93 39.8
HanXRQChr12g0357751 Helianthus annuus HOM05D006256 ORTHO05D007833 7.0e-07 57.8 73 43.8
Potri.018G102700 Populus trichocarpa HOM05D006256 ORTHO05D007833 7.0e-07 57.8 85 41.2
Hund08959 Selenicereus undatus HOM05D006256 ORTHO05D007833 7.0e-07 57.8 74 43.2
unitig_748.g7194 Utricularia gibba HOM05D006256 ORTHO05D007833 7.0e-07 57.8 70 47.1
AT2G24090 Arabidopsis thaliana HOM05D006256 ORTHO05D007833 9.2e-07 57.4 100 40.0
ClCG06G012650 Citrullus lanatus HOM05D006256 ORTHO05D007833 9.2e-07 57.4 121 38.0
SEGI_40166 Sequoiadendron giganteum HOM05D006256 ORTHO05D007833 9.2e-07 57.4 69 44.9
Lalb_Chr13g0300681 Lupinus albus HOM05D006256 ORTHO05D007833 1.2e-06 57.0 115 34.8
Prupe.1G102100 Prunus persica HOM05D006256 ORTHO05D007833 1.6e-06 56.6 82 41.5
ATR0580G126 Amborella trichopoda HOM05D006256 ORTHO05D007833 2.0e-06 56.2 60 50.0
CDE02G1547 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 2.0e-06 56.2 112 33.9
MELO3C010199.2 Cucumis melo HOM05D006256 ORTHO05D007833 2.0e-06 56.2 117 35.9
Thhalv10000362m.g Eutrema salsugineum HOM05D006256 ORTHO05D007833 2.0e-06 56.2 104 36.5
TAR626G0939 Trochodendron aralioides HOM05D006256 ORTHO05D007833 2.0e-06 56.2 64 45.3
COL.COLO4_05401 Corchorus olitorius HOM05D006256 ORTHO05D007833 2.7e-06 55.8 96 39.6
Manes.14G113600 Manihot esculenta HOM05D006256 ORTHO05D007833 2.7e-06 55.8 92 37.0
Sed0025015 Sechium edule HOM05D006256 ORTHO05D007833 2.7e-06 55.8 103 38.8
BcaC07g40961 Brassica carinata HOM05D006256 ORTHO05D007833 3.5e-06 55.5 114 36.8
CAN.G1190.22 Capsicum annuum HOM05D006256 ORTHO05D007833 3.5e-06 55.5 51 58.8
arahy.Tifrunner.gnm1.ann1.RJ4A7B Arachis hypogaea HOM05D006256 ORTHO05D007833 4.5e-06 55.1 97 35.1
Psat7g006560 Pisum sativum HOM05D006256 ORTHO05D007833 4.5e-06 55.1 97 37.1
C08p39560 Brassica napus HOM05D006256 ORTHO05D007833 5.9e-06 54.7 114 35.1
BolC8t51529H Brassica oleracea HOM05D006256 ORTHO05D007833 5.9e-06 54.7 114 35.1
CDE05G2121 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 5.9e-06 54.7 110 33.6
Lsat_1_v5_gn_5_88481 Lactuca sativa HOM05D006256 ORTHO05D007833 5.9e-06 54.7 116 35.3
Phvul.003G153700 Phaseolus vulgaris HOM05D006256 ORTHO05D007833 5.9e-06 54.7 118 33.9
TPR.G24835 Trifolium pratense HOM05D006256 ORTHO05D007833 5.9e-06 54.7 54 51.9
GSVIVG01012561001 Vitis vinifera HOM05D006256 ORTHO05D007833 5.9e-06 54.7 60 45.0
GSVIVG01012574001 Vitis vinifera HOM05D006256 ORTHO05D007833 5.9e-06 54.7 60 45.0
Gohir.A08G087800 Gossypium hirsutum HOM05D006256 ORTHO05D007833 7.7e-06 54.3 124 34.7


User provided reference genes

Program Settings