Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 0.0e+00 1370.1 702 100.0
MCO14G073 Micromonas commoda HOM05D004492 ORTHO05D005602 2.0e-10 72.0 270 27.4
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 5.9e-10 70.5 572 22.6
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 7.7e-10 70.1 404 23.3
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.0e-09 69.7 308 25.6
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 1.0e-09 69.7 308 25.6
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 1.0e-09 69.7 383 24.0
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.3e-09 69.3 403 23.3
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 1.7e-09 68.9 250 27.6
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 2.2e-09 68.6 303 24.1
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 2.2e-09 68.6 307 26.1
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 2.2e-09 68.6 321 22.7
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 2.2e-09 68.6 366 22.7
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 3.8e-09 67.8 309 24.9
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 6.5e-09 67.0 107 34.6
MCO16G494 Micromonas commoda HOM05D001891 ORTHO05D009514 6.5e-09 67.0 88 36.4
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 8.5e-09 66.6 307 25.7
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 1.9e-08 65.5 307 25.7
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 1.9e-08 65.5 319 25.1
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 2.5e-08 65.1 161 31.1
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 3.2e-08 64.7 335 24.8
MCO03G306 Micromonas commoda HOM05D004492 ORTHO05D005602 3.2e-08 64.7 82 40.2
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 4.2e-08 64.3 303 22.4
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 4.2e-08 64.3 424 22.9
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 4.2e-08 64.3 169 30.8
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 5.5e-08 63.9 104 34.6
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 7.2e-08 63.5 323 22.6
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 7.2e-08 63.5 247 22.7
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 9.4e-08 63.2 316 23.7
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 9.4e-08 63.2 97 34.0
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 9.4e-08 63.2 158 28.5
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 9.4e-08 63.2 165 30.3
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 1.2e-07 62.8 371 23.2
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 1.2e-07 62.8 371 23.2
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 1.2e-07 62.8 356 22.8
AagrBONN_evm.TU.Sc2ySwM_368.2743 Anthoceros agrestis HOM05D006673 ORTHO05D008458 1.6e-07 62.4 137 29.9
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 1.6e-07 62.4 323 24.1
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 1.6e-07 62.4 428 23.1
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 2.7e-07 61.6 322 23.3
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 3.6e-07 61.2 131 32.8
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.6e-07 61.2 572 21.9
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 4.7e-07 60.8 569 20.6
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 4.7e-07 60.8 323 22.9
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 8.0e-07 60.1 321 22.7
PRCOL_00003758 Prasinoderma coloniale HOM05D006673 ORTHO05D008458 8.0e-07 60.1 79 39.2
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 1.0e-06 59.7 379 23.0
MCO13G074 Micromonas commoda HOM05D006673 ORTHO05D008458 1.0e-06 59.7 425 24.5
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 1.0e-06 59.7 328 25.6
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.0e-06 59.7 316 20.6
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.4e-06 59.3 330 22.4
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 1.4e-06 59.3 92 39.1
Lj5g0008255 Lotus japonicus HOM05D007640 ORTHO05D009514 1.8e-06 58.9 87 32.2
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 1.8e-06 58.9 83 42.2
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 2.3e-06 58.5 243 22.6
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 2.3e-06 58.5 323 23.5
SEGI_08209 Sequoiadendron giganteum HOM05D006673 ORTHO05D008458 2.3e-06 58.5 84 35.7
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 3.0e-06 58.2 60 43.3
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 3.0e-06 58.2 111 30.6
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 3.0e-06 58.2 96 36.5
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 4.0e-06 57.8 273 23.1
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 4.0e-06 57.8 93 31.2
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 4.0e-06 57.8 253 24.5
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 4.0e-06 57.8 90 34.4
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 5.2e-06 57.4 263 21.3
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 5.2e-06 57.4 114 32.5
Lalb_Chr06g0173431 Lupinus albus HOM05D007640 ORTHO05D009514 5.2e-06 57.4 87 31.0
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 5.2e-06 57.4 58 43.1
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 6.8e-06 57.0 108 29.6
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 8.8e-06 56.6 82 41.5
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 8.8e-06 56.6 52 46.2


User provided reference genes

Program Settings