Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.1e-223 778.1 379 100.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 4.8e-91 339.0 389 48.1
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 4.8e-91 339.0 386 46.9
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.4e-90 337.4 383 45.7
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.8e-90 337.0 388 48.2
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 2.4e-90 336.7 386 46.9
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 3.1e-90 336.3 383 46.0
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 5.3e-90 335.5 383 45.7
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 5.3e-90 335.5 383 46.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.3e-90 335.5 384 46.6
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 5.3e-90 335.5 386 46.9
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.3e-90 335.5 384 47.7
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 9.1e-90 334.7 390 45.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 9.1e-90 334.7 383 44.9
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 9.1e-90 334.7 383 44.9
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 9.1e-90 334.7 383 44.9
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-89 334.3 384 46.6
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.5e-89 334.0 389 46.0
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.0e-89 333.6 386 46.4
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.6e-89 333.2 386 46.6
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.5e-89 332.4 383 46.0
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 5.9e-89 332.0 386 46.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 5.9e-89 332.0 380 46.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.0e-88 331.3 386 46.1
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.3e-88 330.9 383 44.9
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.3e-88 330.9 383 44.9
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.3e-88 330.9 383 45.7
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.7e-88 330.5 376 46.5
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.2e-88 330.1 386 46.6
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.9e-88 329.7 383 44.6
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.9e-88 329.7 383 45.4
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.9e-88 329.7 384 46.4
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.8e-88 329.3 383 46.5
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 3.8e-88 329.3 384 46.1
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 5.0e-88 328.9 387 46.5
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 5.0e-88 328.9 383 45.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 5.0e-88 328.9 383 45.4
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 6.5e-88 328.6 383 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 8.5e-88 328.2 407 45.0
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 8.5e-88 328.2 383 44.4
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 8.5e-88 328.2 385 46.2
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 8.5e-88 328.2 383 45.7
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.1e-87 327.8 386 46.1
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.4e-87 327.4 386 46.4
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.4e-87 327.4 383 46.2
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.9e-87 327.0 383 46.0
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.9e-87 327.0 383 46.0
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.5e-87 326.6 388 44.8
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.5e-87 326.6 383 44.9
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 3.2e-87 326.2 388 45.4
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.2e-87 326.2 384 45.8
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.2e-87 326.2 383 43.9
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 4.2e-87 325.9 386 45.1
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 4.2e-87 325.9 387 45.2
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.5e-87 325.5 383 45.7
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 5.5e-87 325.5 383 45.2
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 7.2e-87 325.1 383 45.4
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 7.2e-87 325.1 386 46.4
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 7.2e-87 325.1 383 45.2
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 7.2e-87 325.1 383 45.4
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 9.4e-87 324.7 384 45.8
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 9.4e-87 324.7 386 45.6
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.2e-86 324.3 393 45.3
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.6e-86 323.9 389 45.5
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 2.1e-86 323.6 383 44.4
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.1e-86 323.6 387 45.7
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.7e-86 323.2 414 43.5
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.6e-86 322.8 383 45.4
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.6e-86 322.8 383 44.4
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.6e-86 322.8 387 45.2
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 4.7e-86 322.4 383 44.4
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 4.7e-86 322.4 383 44.9
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 4.7e-86 322.4 385 44.9
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 8.0e-86 321.6 383 44.6
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 8.0e-86 321.6 383 45.4
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 8.0e-86 321.6 383 45.4
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.0e-85 321.2 352 46.9
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.4e-85 320.9 383 45.2
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.4e-85 320.9 383 43.1
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.9e-85 319.3 384 46.9
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 3.9e-85 319.3 383 45.2
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 3.9e-85 319.3 390 43.8
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.1e-84 317.8 396 43.7
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.1e-84 317.8 371 45.0
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.5e-84 317.4 387 45.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 2.0e-84 317.0 385 44.9
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.6e-84 316.6 383 44.6
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.6e-84 316.6 387 46.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.3e-84 316.2 386 44.6
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 4.4e-84 315.8 386 44.3
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.3e-83 314.3 402 43.3
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.3e-83 314.3 390 43.3
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.8e-83 313.2 390 43.6
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 3.7e-83 312.8 413 43.3
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 6.3e-83 312.0 379 44.6
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.1e-82 309.3 387 45.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.2e-81 307.8 394 43.7
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.6e-81 307.4 419 41.3
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-80 303.9 391 41.2
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 2.2e-80 303.5 422 41.2
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.1e-79 301.2 389 42.2
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 9.4e-79 298.1 383 43.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 6.1e-78 295.4 384 41.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.0e-76 290.4 386 41.7
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 3.7e-75 286.2 386 40.9
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 7.7e-73 278.5 373 41.0
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.9e-72 276.6 384 42.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.1e-70 270.4 362 42.5
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 8.0e-70 268.5 346 42.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.8e-68 261.5 382 40.3
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.2e-67 260.4 386 39.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.3e-64 251.1 536 32.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 4.2e-63 246.1 389 38.3
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 3.6e-62 243.0 384 38.3
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 3.8e-56 223.0 328 40.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 7.3e-55 218.8 313 40.6
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 5.2e-53 212.6 351 36.5
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 9.5e-47 191.8 251 42.6
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.9e-43 179.5 302 35.8
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.9e-43 179.5 302 35.8
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.4e-42 176.0 262 38.2
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 5.6e-39 166.0 260 36.9
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 4.7e-38 162.9 286 35.3
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.6e-36 157.1 460 30.9
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.4e-36 156.8 286 33.9
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 7.1e-34 149.1 123 57.7
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.6e-33 147.9 297 33.3
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.1e-29 135.2 199 39.7
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.4e-26 124.0 248 33.1
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 6.0e-17 92.8 113 46.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 3.4e-12 77.0 79 46.8
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 6.4e-11 72.8 116 42.2
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 4.6e-09 66.6 63 46.0
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 6.7e-08 62.8 38 68.4
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 5.6e-07 59.7 106 34.0
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.6e-06 58.2 70 42.9
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.8e-06 57.4 70 41.4
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.8e-06 57.4 70 41.4
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 2.8e-06 57.4 70 41.4
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.8e-06 57.4 70 41.4
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.8e-06 57.4 69 43.5
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.7e-06 57.0 39 59.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 4.8e-06 56.6 70 41.4
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 4.8e-06 56.6 70 41.4
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 4.8e-06 56.6 70 41.4
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 6.2e-06 56.2 68 42.6


User provided reference genes

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