Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 0.0e+00 2393.2 1196 100.0
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 3.2e-117 427.6 776 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 2.7e-116 424.5 775 38.7
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.0e-116 422.9 767 38.1
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.0e-116 422.9 767 38.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 4.4e-114 417.2 766 37.2
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 4.4e-114 417.2 767 37.0
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.7e-114 416.8 781 36.9
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.0e-112 409.8 768 37.6
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 5.9e-111 406.8 766 36.6
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 1.3e-110 405.6 768 36.2
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 5.6e-109 400.2 779 36.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.1e-108 398.3 784 36.0
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 2.1e-108 398.3 762 35.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 2.8e-108 397.9 764 36.6
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 3.6e-108 397.5 773 36.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 4.7e-108 397.1 785 35.7
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 8.0e-108 396.4 761 36.5
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 8.0e-108 396.4 766 35.9
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 1.4e-107 395.6 763 36.2
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 1.8e-107 395.2 767 36.1
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.8e-107 395.2 771 35.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 3.0e-107 394.4 763 36.3
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 3.0e-107 394.4 763 35.4
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 3.0e-107 394.4 770 36.4
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 4.0e-107 394.0 786 34.9
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 4.0e-107 394.0 766 35.9
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 4.0e-107 394.0 766 35.9
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 6.8e-107 393.3 761 36.1
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 6.8e-107 393.3 773 36.0
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 8.9e-107 392.9 764 36.5
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 1.5e-106 392.1 766 36.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 2.0e-106 391.7 764 36.4
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 2.6e-106 391.3 768 36.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 3.4e-106 391.0 765 35.3
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 4.4e-106 390.6 764 35.9
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 4.4e-106 390.6 779 35.3
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 5.7e-106 390.2 765 35.3
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 5.7e-106 390.2 765 35.4
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 5.7e-106 390.2 763 35.1
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 7.5e-106 389.8 762 35.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 7.5e-106 389.8 765 35.2
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.8e-106 389.4 764 34.8
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 1.7e-105 388.7 762 34.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 2.2e-105 388.3 767 34.7
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 2.2e-105 388.3 765 34.9
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 2.9e-105 387.9 766 35.6
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 3.7e-105 387.5 762 35.8
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 3.7e-105 387.5 762 35.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 8.3e-105 386.3 768 35.9
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 8.3e-105 386.3 768 35.9
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 1.4e-104 385.6 769 35.1
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 2.4e-104 384.8 765 35.4
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 3.2e-104 384.4 762 36.0
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 5.4e-104 383.6 765 35.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 5.4e-104 383.6 764 34.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 5.4e-104 383.6 772 35.9
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 7.0e-104 383.3 764 34.4
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 7.0e-104 383.3 765 34.9
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 9.2e-104 382.9 765 35.4
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 1.6e-103 382.1 763 36.0
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 1.6e-103 382.1 765 35.9
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 2.0e-103 381.7 765 34.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 3.5e-103 380.9 767 35.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 3.5e-103 380.9 767 34.9
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 4.6e-103 380.6 769 35.0
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 4.6e-103 380.6 766 35.1
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 4.6e-103 380.6 766 34.7
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 5.9e-103 380.2 763 34.9
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 7.8e-103 379.8 765 35.0
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 7.8e-103 379.8 765 34.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 1.0e-102 379.4 765 34.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 1.3e-102 379.0 762 35.6
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 1.7e-102 378.6 766 35.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 1.7e-102 378.6 762 35.2
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 1.7e-102 378.6 783 34.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 6.6e-102 376.7 766 34.1
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 1.1e-101 375.9 764 35.3
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 1.5e-101 375.6 764 35.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 1.9e-101 375.2 764 35.3
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 2.5e-101 374.8 762 34.5
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 3.3e-101 374.4 797 34.4
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 9.5e-101 372.9 763 34.9
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 1.2e-100 372.5 826 34.3
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 1.2e-100 372.5 781 34.8
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.6e-100 372.1 774 35.5
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 3.6e-100 370.9 766 34.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 6.2e-100 370.2 763 34.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 1.8e-99 368.6 768 35.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 6.8e-99 366.7 745 34.5
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.2e-98 365.9 746 35.1
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 2.0e-98 365.2 764 34.4
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 1.3e-97 362.5 788 34.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 1.7e-97 362.1 769 34.3
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 1.7e-97 362.1 762 34.5
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 6.4e-97 360.1 764 34.4
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 3.2e-96 357.8 767 34.3
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 9.2e-96 356.3 732 34.2
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 1.6e-95 355.5 638 37.1
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 3.5e-95 354.4 769 34.2
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.7e-94 352.1 763 34.6
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 2.5e-93 348.2 640 36.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 2.1e-92 345.1 766 33.4
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 4.7e-92 344.0 860 32.1
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.3e-91 341.7 761 34.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.9e-89 334.0 766 33.2
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 8.3e-89 333.2 761 33.5
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 3.9e-86 324.3 814 32.6
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.7e-84 317.4 745 32.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 6.2e-84 317.0 629 35.8
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.4e-83 315.8 590 35.9
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.0e-83 314.3 748 32.6
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.5e-77 295.8 665 32.6
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.5e-77 295.0 590 35.1
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 8.9e-75 286.6 767 31.4
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.1e-69 269.6 653 33.7
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 9.9e-66 256.5 779 29.5
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.9e-57 227.6 469 35.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.4e-56 226.1 475 35.8
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.8e-46 192.6 440 33.9
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.1e-43 183.3 388 34.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 4.5e-34 151.4 403 30.8
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.4e-29 134.8 292 34.6
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.1e-27 130.2 222 36.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.8e-27 129.4 238 36.6
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 7.7e-26 124.0 197 37.6
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.0e-21 109.4 115 49.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 3.1e-19 102.1 258 31.8
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 6.5e-17 94.4 152 38.8
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.0e-13 82.8 229 32.3
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.8e-12 79.0 82 52.4
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 6.3e-12 77.8 171 31.6
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.8e-09 68.6 198 29.8
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.5e-08 66.6 183 29.5
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.2e-07 63.5 79 39.2
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.0e-06 60.5 79 39.2
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.3e-06 59.3 94 36.2
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.2e-06 58.2 78 39.7


User provided reference genes

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