Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 2.1e-132 475.7 239 100.0
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.7e-20 102.8 191 36.6
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 6.5e-17 92.0 189 34.9
PRCOL_00006077 Prasinoderma coloniale HOM05D006499 ORTHO05D007874 6.0e-15 85.5 182 34.6
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 3.0e-14 83.2 179 33.0
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-12 77.8 185 31.9
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.1e-11 73.2 192 29.7
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.3e-11 72.4 160 35.0
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.3e-09 67.8 182 36.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.3e-09 67.8 162 35.2
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.3e-09 67.8 161 36.0
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-09 67.8 185 28.6
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.2e-09 67.0 167 32.9
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.2e-09 67.0 146 31.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.1e-08 64.7 144 31.2
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.5e-08 63.5 72 41.7
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 3.2e-08 63.2 81 39.5
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.2e-08 63.2 81 39.5
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 7.2e-08 62.0 169 33.7
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 9.4e-08 61.6 166 30.1
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 9.4e-08 61.6 181 29.3
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.2e-07 61.2 132 31.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.2e-07 61.2 168 31.0
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.6e-07 60.8 167 30.5
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.6e-07 60.8 145 29.7
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.6e-07 60.8 165 31.5
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.6e-07 60.8 181 28.7
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.6e-07 60.8 182 28.6
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.1e-07 60.5 84 36.9
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.1e-07 60.5 169 28.4
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.7e-07 60.1 83 37.3
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 2.7e-07 60.1 61 44.3
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 2.7e-07 60.1 172 28.5
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.7e-07 60.1 74 40.5
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 3.6e-07 59.7 165 29.7
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 4.6e-07 59.3 160 28.1
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 6.1e-07 58.9 88 34.1
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 6.1e-07 58.9 145 29.0
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 7.9e-07 58.5 181 29.3
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 7.9e-07 58.5 72 38.9
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 7.9e-07 58.5 81 35.8
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.0e-06 58.2 153 32.0
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.0e-06 58.2 166 30.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.4e-06 57.8 83 37.3
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.4e-06 57.8 158 29.7
Cfa021867 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.8e-06 57.4 103 35.0
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 2.3e-06 57.0 169 29.6
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.3e-06 57.0 166 28.9
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.3e-06 57.0 88 35.2
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.0e-06 56.6 185 29.2
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 3.0e-06 56.6 90 31.1
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.0e-06 56.6 68 39.7
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.9e-06 56.2 166 29.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.9e-06 56.2 98 33.7
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.9e-06 56.2 83 33.7
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 5.1e-06 55.8 164 29.3
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.7e-06 55.5 188 26.6
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 6.7e-06 55.5 70 38.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 6.7e-06 55.5 70 38.6
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 8.8e-06 55.1 69 39.1
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 8.8e-06 55.1 70 38.6


User provided reference genes

Program Settings