Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G170 Micromonas commoda HOM05D002590 ORTHO05D002763 0.0e+00 1768.1 861 100.0
Carub.0007s0232 Capsella rubella HOM05D002590 ORTHO05D002763 1.6e-20 105.9 272 30.5
AT4G37900 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 2.9e-19 101.7 273 30.0
AT2G22660 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 4.2e-18 97.8 306 29.4
A08p22920 Brassica napus HOM05D002590 ORTHO05D002763 4.2e-18 97.8 265 30.6
BcaB03g12326 Brassica carinata HOM05D002590 ORTHO05D002763 7.2e-18 97.1 348 26.4
BraA08t34254Z Brassica rapa HOM05D002590 ORTHO05D002763 7.2e-18 97.1 267 30.0
AL7G12750 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 1.2e-17 96.3 272 30.1
C03p78950 Brassica napus HOM05D002590 ORTHO05D002763 1.2e-17 96.3 266 31.2
BraA04t17342Z Brassica rapa HOM05D002590 ORTHO05D002763 1.6e-17 95.9 355 27.3
BcaC01g00368 Brassica carinata HOM05D002590 ORTHO05D002763 4.7e-17 94.4 266 31.2
Aa31LG6G14820 Aethionema arabicum HOM05D002590 ORTHO05D002763 6.1e-17 94.0 268 31.3
C04p51940 Brassica napus HOM05D002590 ORTHO05D002763 6.1e-17 94.0 264 30.7
CARHR246300 Cardamine hirsuta HOM05D002590 ORTHO05D002763 6.1e-17 94.0 268 29.5
Sp7g35540 Schrenkiella parvula HOM05D002590 ORTHO05D002763 6.1e-17 94.0 273 28.6
THA.LOC104807659 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 6.1e-17 94.0 291 30.9
CARHR113920 Cardamine hirsuta HOM05D002590 ORTHO05D002763 8.0e-17 93.6 250 31.2
Sp4g01683 Schrenkiella parvula HOM05D002590 ORTHO05D002763 1.0e-16 93.2 266 32.0
BolC3t20138H Brassica oleracea HOM05D002590 ORTHO05D002763 1.8e-16 92.4 266 30.8
Ciclev10024875m.g Citrus clementina HOM05D002590 ORTHO05D002763 3.0e-16 91.7 333 27.9
A04p17130 Brassica napus HOM05D002590 ORTHO05D002763 4.0e-16 91.3 355 27.0
PGR031G2118 Punica granatum HOM05D002590 ORTHO05D002763 4.0e-16 91.3 313 29.1
BcaC02g08627 Brassica carinata HOM05D002590 ORTHO05D002763 5.2e-16 90.9 264 30.3
BcaNung03410 Brassica carinata HOM05D002590 ORTHO05D002763 5.2e-16 90.9 453 23.4
BolC4t26766H Brassica oleracea HOM05D002590 ORTHO05D002763 5.2e-16 90.9 264 30.3
Carub.0004s0181 Capsella rubella HOM05D002590 ORTHO05D002763 6.8e-16 90.5 293 29.4
Thhalv10024448m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 6.8e-16 90.5 269 28.6
PSO210G0325 Papaver somniferum HOM05D002590 ORTHO05D002763 6.8e-16 90.5 312 29.5
ATR0800G118 Amborella trichopoda HOM05D002590 ORTHO05D002763 8.8e-16 90.1 313 29.4
Cpa.g.sc755.1 Carica papaya HOM05D002590 ORTHO05D002763 8.8e-16 90.1 276 30.1
Gorai.010G085100 Gossypium raimondii HOM05D002590 ORTHO05D002763 8.8e-16 90.1 261 31.4
BcaB06g27814 Brassica carinata HOM05D002590 ORTHO05D002763 1.2e-15 89.7 268 30.6
Sc03g0000580 Simmondsia chinensis HOM05D002590 ORTHO05D002763 1.2e-15 89.7 314 29.0
ECA238G1257 Erigeron canadensis HOM05D002590 ORTHO05D002763 2.0e-15 89.0 245 29.8
AL4G12200 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 3.4e-15 88.2 254 30.3
A06p04580 Brassica napus HOM05D002590 ORTHO05D002763 3.4e-15 88.2 310 27.4
BraA06t23662Z Brassica rapa HOM05D002590 ORTHO05D002763 3.4e-15 88.2 310 27.4
Gohir.A06G074100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 3.4e-15 88.2 261 30.3
GSVIVG01006770001 Vitis vinifera HOM05D002590 ORTHO05D002763 3.4e-15 88.2 350 26.0
Aqoxy6G00635 Aquilegia oxysepala HOM05D002590 ORTHO05D002763 4.4e-15 87.8 263 29.3
Cc07_g07850 Coffea canephora HOM05D002590 ORTHO05D002763 1.7e-14 85.9 303 28.1
Duzib187G0808 Durio zibethinus HOM05D002590 ORTHO05D002763 1.7e-14 85.9 280 28.2
MD08G1208800 Malus domestica HOM05D002590 ORTHO05D002763 1.7e-14 85.9 314 27.1
BolC6t35405H Brassica oleracea HOM05D002590 ORTHO05D002763 2.2e-14 85.5 289 26.0
CiPaw.07G042400 Carya illinoinensis HOM05D002590 ORTHO05D002763 2.2e-14 85.5 273 30.0
TAR376G0018 Trochodendron aralioides HOM05D002590 ORTHO05D002763 2.2e-14 85.5 277 27.8
CANSAT01G0583 Cannabis sativa HOM05D002590 ORTHO05D002763 2.8e-14 85.1 284 28.5
CsaV3_3G003000 Cucumis sativus L. HOM05D002590 ORTHO05D002763 2.8e-14 85.1 422 26.1
BolC6t35403H Brassica oleracea HOM05D002590 ORTHO05D002763 3.7e-14 84.7 289 25.6
Dinv44885 Davidia involucrata HOM05D002590 ORTHO05D002763 3.7e-14 84.7 258 29.5
Thhalv10012182m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 3.7e-14 84.7 256 27.7
Thecc.01G083700 Theobroma cacao HOM05D002590 ORTHO05D002763 4.9e-14 84.3 284 28.2
MD01G1044900 Malus domestica HOM05D002590 ORTHO05D002763 6.3e-14 84.0 370 26.5
Atru.chr3.1151 Acer truncatum HOM05D002590 ORTHO05D002763 8.3e-14 83.6 331 28.1
Atru.chr3.1168 Acer truncatum HOM05D002590 ORTHO05D002763 8.3e-14 83.6 331 28.1
BcaC08g43023 Brassica carinata HOM05D002590 ORTHO05D002763 8.3e-14 83.6 289 26.0
HanXRQChr14g0447071 Helianthus annuus HOM05D002590 ORTHO05D002763 8.3e-14 83.6 270 27.8
Lsat_1_v5_gn_2_82201 Lactuca sativa HOM05D002590 ORTHO05D002763 8.3e-14 83.6 283 26.9
ClCG00G003360 Citrullus lanatus HOM05D002590 ORTHO05D002763 1.1e-13 83.2 425 25.6
COL.COLO4_11678 Corchorus olitorius HOM05D002590 ORTHO05D002763 1.1e-13 83.2 272 28.7
Pp3c21_5400 Physcomitrium patens HOM05D002590 ORTHO05D002763 1.1e-13 83.2 261 26.4
Migut.L00448 Erythranthe guttata HOM05D002590 ORTHO05D002763 1.8e-13 82.4 435 25.3
HanXRQChr13g0408411 Helianthus annuus HOM05D002590 ORTHO05D002763 1.8e-13 82.4 252 30.2
BcaC08g43021 Brassica carinata HOM05D002590 ORTHO05D002763 2.4e-13 82.0 313 24.9
C06p02740 Brassica napus HOM05D002590 ORTHO05D002763 2.4e-13 82.0 289 25.6
Nitab4.5_0000291g0070 Nicotiana tabacum HOM05D002590 ORTHO05D002763 2.4e-13 82.0 259 29.3
Sed0010498 Sechium edule HOM05D002590 ORTHO05D002763 2.4e-13 82.0 433 25.9
TAR381G1618 Trochodendron aralioides HOM05D002590 ORTHO05D002763 2.4e-13 82.0 263 28.5
Medtr5g030890 Medicago truncatula HOM05D002590 ORTHO05D002763 3.1e-13 81.6 335 27.5
Potri.015G042800 Populus trichocarpa HOM05D002590 ORTHO05D002763 3.1e-13 81.6 279 29.4
CSS0035578 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 4.1e-13 81.3 255 28.2
MCO09G412 Micromonas commoda HOM05D002590 ORTHO05D002763 4.1e-13 81.3 322 27.6
RcHm_v2.0_Chr2g0109991 Rosa chinensis HOM05D002590 ORTHO05D002763 4.1e-13 81.3 269 29.0
arahy.Tifrunner.gnm1.ann1.U2GM3Q Arachis hypogaea HOM05D002590 ORTHO05D002763 5.4e-13 80.9 237 27.8
CSS0020341 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 5.4e-13 80.9 311 27.3
CSS0030408 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 5.4e-13 80.9 311 27.3
CiPaw.08G145400 Carya illinoinensis HOM05D002590 ORTHO05D002763 5.4e-13 80.9 265 27.5
Dinv36977 Davidia involucrata HOM05D002590 ORTHO05D002763 5.4e-13 80.9 307 25.7
MELO3C013963.2 Cucumis melo HOM05D002590 ORTHO05D002763 7.0e-13 80.5 427 24.6
Glyma.01G019800 Glycine max HOM05D002590 ORTHO05D002763 7.0e-13 80.5 338 25.7
Prupe.6G209600 Prunus persica HOM05D002590 ORTHO05D002763 7.0e-13 80.5 370 26.5
TAR381G1305 Trochodendron aralioides HOM05D002590 ORTHO05D002763 7.0e-13 80.5 264 29.2
FvH4_5g33890 Fragaria vesca HOM05D002590 ORTHO05D002763 9.2e-13 80.1 276 27.9
Nitab4.5_0002135g0020 Nicotiana tabacum HOM05D002590 ORTHO05D002763 9.2e-13 80.1 255 28.6
arahy.Tifrunner.gnm1.ann1.F9GNLP Arachis hypogaea HOM05D002590 ORTHO05D002763 1.2e-12 79.7 241 27.4
Lj4C175G12 Lonicera japonica HOM05D002590 ORTHO05D002763 1.2e-12 79.7 282 26.6
Nitab4.5_0002713g0020 Nicotiana tabacum HOM05D002590 ORTHO05D002763 1.2e-12 79.7 198 30.3
PSO210G6445 Papaver somniferum HOM05D002590 ORTHO05D002763 1.2e-12 79.7 291 27.8
PGSC0003DMG400010387 Solanum tuberosum HOM05D002590 ORTHO05D002763 1.2e-12 79.7 198 30.3
CAN.G215.6 Capsicum annuum HOM05D002590 ORTHO05D002763 1.6e-12 79.3 251 28.7
Manes.05G187500 Manihot esculenta HOM05D002590 ORTHO05D002763 1.6e-12 79.3 443 25.3
Nn5g29774 Nelumbo nucifera HOM05D002590 ORTHO05D002763 1.6e-12 79.3 313 26.5
Nitab4.5_0000036g0420 Nicotiana tabacum HOM05D002590 ORTHO05D002763 1.6e-12 79.3 198 30.3
TWI56G0280 Tripterygium wilfordii HOM05D002590 ORTHO05D002763 1.6e-12 79.3 260 26.9
C06p02760 Brassica napus HOM05D002590 ORTHO05D002763 2.0e-12 79.0 290 25.2
FAN08G1103 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.0e-12 79.0 241 29.5
FAN18G3860 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.0e-12 79.0 276 27.5
Glyma.09G202600 Glycine max HOM05D002590 ORTHO05D002763 2.0e-12 79.0 362 24.6
Hma1.2p1_0080F.1_g042110 Hydrangea macrophylla HOM05D002590 ORTHO05D002763 2.0e-12 79.0 274 27.4
Actinidia19606 Actinidia chinensis HOM05D002590 ORTHO05D002763 2.7e-12 78.6 274 27.0
MSTRG.3507 Avicennia marina HOM05D002590 ORTHO05D002763 2.7e-12 78.6 181 30.4
BcaB07g33776 Brassica carinata HOM05D002590 ORTHO05D002763 2.7e-12 78.6 271 26.6
BcaB07g33777 Brassica carinata HOM05D002590 ORTHO05D002763 2.7e-12 78.6 271 26.6
CDE04G2487 Ceratophyllum demersum HOM05D002590 ORTHO05D002763 3.5e-12 78.2 305 26.9
QL06p037430 Quercus lobata HOM05D002590 ORTHO05D002763 3.5e-12 78.2 314 27.7
Glyma.02G217400 Glycine max HOM05D002590 ORTHO05D002763 4.5e-12 77.8 275 26.9
TWI74G1198 Tripterygium wilfordii HOM05D002590 ORTHO05D002763 4.5e-12 77.8 282 27.0
Zm00001eb166550 Zea mays HOM05D002590 ORTHO05D002763 4.5e-12 77.8 282 26.6
Ah.02g129220 Amaranthus hybridus HOM05D002590 ORTHO05D002763 5.9e-12 77.4 301 28.2
Manes.12G121200 Manihot esculenta HOM05D002590 ORTHO05D002763 5.9e-12 77.4 274 27.0
Manes.13G104100 Manihot esculenta HOM05D002590 ORTHO05D002763 5.9e-12 77.4 311 28.0
SEGI_10955 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 5.9e-12 77.4 307 26.4
HanXRQChr05g0157021 Helianthus annuus HOM05D002590 ORTHO05D002763 7.7e-12 77.0 266 28.6
Mapoly0004s0179 Marchantia polymorpha HOM05D002590 ORTHO05D002763 7.7e-12 77.0 216 28.2
Peaxi162Scf00943g00417 Petunia axillaris HOM05D002590 ORTHO05D002763 1.0e-11 76.6 195 29.7
Psat2g134480 Pisum sativum HOM05D002590 ORTHO05D002763 1.0e-11 76.6 340 26.2
Solyc02g063450.4 Solanum lycopersicum HOM05D002590 ORTHO05D002763 1.0e-11 76.6 232 28.9
Sopen02g014540 Solanum pennellii HOM05D002590 ORTHO05D002763 1.0e-11 76.6 232 28.9
TPR.G37027 Trifolium pratense HOM05D002590 ORTHO05D002763 1.3e-11 76.3 456 24.1
CAN.G1061.26 Capsicum annuum HOM05D002590 ORTHO05D002763 1.7e-11 75.9 262 26.3
Gohir.D03G034500 Gossypium hirsutum HOM05D002590 ORTHO05D002763 1.7e-11 75.9 300 27.7
Lj2g0000215 Lotus japonicus HOM05D002590 ORTHO05D002763 1.7e-11 75.9 277 27.1
Phvul.008G184500 Phaseolus vulgaris HOM05D002590 ORTHO05D002763 1.7e-11 75.9 276 25.7
EL10Ac1g00686 Beta vulgaris HOM05D002590 ORTHO05D002763 2.3e-11 75.5 286 27.6
ClCG10G002950 Citrullus lanatus HOM05D002590 ORTHO05D002763 2.3e-11 75.5 253 27.3
Gohir.A02G146100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 2.3e-11 75.5 298 28.2
VMungo0647G0151 Vigna mungo HOM05D002590 ORTHO05D002763 2.3e-11 75.5 279 26.5
Eucgr.I00602 Eucalyptus grandis HOM05D002590 ORTHO05D002763 2.9e-11 75.1 279 27.2
Potri.002G108900 Populus trichocarpa HOM05D002590 ORTHO05D002763 2.9e-11 75.1 307 27.0
THA.LOC104804185 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 2.9e-11 75.1 288 28.8
VMungo1215G2859 Vigna mungo HOM05D002590 ORTHO05D002763 2.9e-11 75.1 458 24.9
Actinidia11925 Actinidia chinensis HOM05D002590 ORTHO05D002763 3.8e-11 74.7 293 27.6
AUR62014335 Chenopodium quinoa HOM05D002590 ORTHO05D002763 3.8e-11 74.7 289 27.3
AUR62019077 Chenopodium quinoa HOM05D002590 ORTHO05D002763 5.0e-11 74.3 296 26.4
Ca_13471_v3 Cicer arietinum L. HOM05D002590 ORTHO05D002763 5.0e-11 74.3 309 26.2
FAN28G1499 Fragaria x ananassa HOM05D002590 ORTHO05D002763 5.0e-11 74.3 370 25.7
Sopen02g036260 Solanum pennellii HOM05D002590 ORTHO05D002763 5.0e-11 74.3 258 26.7
HPP92_013293 Vanilla planifolia HOM05D002590 ORTHO05D002763 5.0e-11 74.3 274 27.0
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 6.6e-11 73.9 372 25.3
Gorai.003G036200 Gossypium raimondii HOM05D002590 ORTHO05D002763 6.6e-11 73.9 310 27.4
SGA_v2.0_scaffold149G36515 Striga asiatica HOM05D002590 ORTHO05D002763 6.6e-11 73.9 205 26.3
EL10Ac6g13303 Beta vulgaris HOM05D002590 ORTHO05D002763 8.6e-11 73.6 203 28.6
FvH4_1g18970 Fragaria vesca HOM05D002590 ORTHO05D002763 8.6e-11 73.6 264 28.8
FAN19G1400 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.1e-10 73.2 370 25.7
Lalb_Chr16g0381481 Lupinus albus HOM05D002590 ORTHO05D002763 1.1e-10 73.2 363 25.9
Mapoly0165s0026 Marchantia polymorpha HOM05D002590 ORTHO05D002763 1.1e-10 73.2 207 30.9
Phvul.002G143100 Phaseolus vulgaris HOM05D002590 ORTHO05D002763 1.1e-10 73.2 304 27.0
Solyc02g091650.4 Solanum lycopersicum HOM05D002590 ORTHO05D002763 1.1e-10 73.2 258 26.7
ClCG10G002960 Citrullus lanatus HOM05D002590 ORTHO05D002763 1.5e-10 72.8 172 28.5
Os11g0621300 Oryza sativa ssp. japonica HOM05D002590 ORTHO05D002763 1.5e-10 72.8 401 24.2
MD08G1209100 Malus domestica HOM05D002590 ORTHO05D002763 1.9e-10 72.4 343 25.1
PGSC0003DMG400030615 Solanum tuberosum HOM05D002590 ORTHO05D002763 1.9e-10 72.4 203 27.6
Hund16613 Selenicereus undatus HOM05D002590 ORTHO05D002763 3.3e-10 71.6 302 26.8
Aa31LG7G14140 Aethionema arabicum HOM05D002590 ORTHO05D002763 4.3e-10 71.2 113 38.1
vmacro05519 Vaccinium macrocarpon HOM05D002590 ORTHO05D002763 5.6e-10 70.9 392 25.3
arahy.Tifrunner.gnm1.ann1.WNQW91 Arachis hypogaea HOM05D002590 ORTHO05D002763 9.5e-10 70.1 307 26.4
arahy.Tifrunner.gnm1.ann1.ZD0NI5 Arachis hypogaea HOM05D002590 ORTHO05D002763 9.5e-10 70.1 307 26.4
Rhsim04G0250100 Rhododendron simsii HOM05D002590 ORTHO05D002763 1.2e-09 69.7 308 24.0
Migut.H00293 Erythranthe guttata HOM05D002590 ORTHO05D002763 1.6e-09 69.3 266 25.9
Mapoly0085s0024 Marchantia polymorpha HOM05D002590 ORTHO05D002763 2.1e-09 68.9 242 26.4
Rhsim07G0172500 Rhododendron simsii HOM05D002590 ORTHO05D002763 2.1e-09 68.9 304 24.0
BolC6t35404H Brassica oleracea HOM05D002590 ORTHO05D002763 3.6e-09 68.2 208 26.9
BraA03t15621Z Brassica rapa HOM05D002590 ORTHO05D002763 3.6e-09 68.2 190 28.9
Mapoly0209s0003 Marchantia polymorpha HOM05D006915 ORTHO05D008716 3.6e-09 68.2 229 29.3
Carub.0008s0981 Capsella rubella HOM05D002590 ORTHO05D002763 6.1e-09 67.4 209 27.8
C07p62730 Brassica napus HOM05D002590 ORTHO05D002763 1.4e-08 66.2 328 23.8
AUR62032878 Chenopodium quinoa HOM05D002590 ORTHO05D002763 1.4e-08 66.2 253 26.5
A03p65710 Brassica napus HOM05D002590 ORTHO05D002763 2.3e-08 65.5 130 31.5
BolC7t46687H Brassica oleracea HOM05D002590 ORTHO05D002763 3.0e-08 65.1 328 23.5
SalBow3G1385 Salvia bowleyana HOM05D002590 ORTHO05D002763 3.0e-08 65.1 250 25.6
RcHm_v2.0_Chr7g0233261 Rosa chinensis HOM05D002590 ORTHO05D002763 8.9e-08 63.5 149 31.5
Pp3c12_24320 Physcomitrium patens HOM05D002590 ORTHO05D002763 4.4e-07 61.2 187 26.2
Mapoly0150s0006 Marchantia polymorpha HOM05D002590 ORTHO05D002763 9.8e-07 60.1 261 25.3
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.2e-06 58.9 79 38.0
Pp3c10_15350 Physcomitrium patens HOM05D000923 ORTHO05D000720 3.7e-06 58.2 173 27.7


User provided reference genes

Program Settings