Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G144 Micromonas commoda HOM05D060798 ORTHO05D001716 0.0e+00 1624.8 946 100.0
MCO01G272 Micromonas commoda HOM05D060798 ORTHO05D001716 8.2e-31 140.2 279 34.4
MCO11G457 Micromonas commoda HOM05D001201 ORTHO05D001100 2.7e-26 125.2 155 44.5
TAR636G0574 Trochodendron aralioides HOM05D003060 ORTHO05D001716 6.7e-09 67.4 90 35.6
Peaxi162Scf00534g00015 Petunia axillaris HOM05D003060 ORTHO05D001716 8.8e-09 67.0 91 33.0
RcHm_v2.0_Chr3g0455351 Rosa chinensis HOM05D003060 ORTHO05D001716 1.2e-08 66.6 96 35.4
vmacro19622 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 2.6e-08 65.5 90 31.1
TAR633G1311 Trochodendron aralioides HOM05D003060 ORTHO05D001716 3.3e-08 65.1 94 33.0
Lsat_1_v5_gn_9_87360 Lactuca sativa HOM05D003060 ORTHO05D001716 4.4e-08 64.7 90 33.3
Lalb_Chr15g0077301 Lupinus albus HOM05D003060 ORTHO05D001716 4.4e-08 64.7 96 33.3
Rhsim04G0220500 Rhododendron simsii HOM05D003060 ORTHO05D001716 4.4e-08 64.7 94 33.0
SEGI_28746 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 4.4e-08 64.7 99 32.3
Oeu010912.1 Olea europaea HOM05D003060 ORTHO05D001716 5.7e-08 64.3 90 31.1
Rhsim05G0141600 Rhododendron simsii HOM05D003060 ORTHO05D001716 5.7e-08 64.3 90 30.0
Sed0012843 Sechium edule HOM05D003060 ORTHO05D001716 5.7e-08 64.3 90 33.3
ATR0706G064 Amborella trichopoda HOM05D003060 ORTHO05D001716 7.5e-08 63.9 106 32.1
HanXRQChr11g0339461 Helianthus annuus HOM05D003060 ORTHO05D001716 7.5e-08 63.9 90 33.3
QL03p012691 Quercus lobata HOM05D003060 ORTHO05D001716 7.5e-08 63.9 90 33.3
SEGI_14874 Sequoiadendron giganteum HOM05D000855 ORTHO05D001716 7.5e-08 63.9 91 35.2
Zm00001eb418070 Zea mays HOM05D003060 ORTHO05D001716 7.5e-08 63.9 92 32.6
MSTRG.20426 Avicennia marina HOM05D003060 ORTHO05D001716 9.7e-08 63.5 90 31.1
FvH4_6g06310 Fragaria vesca HOM05D003060 ORTHO05D001716 9.7e-08 63.5 96 34.4
FAN02G1847 Fragaria x ananassa HOM05D003060 ORTHO05D001716 9.7e-08 63.5 96 34.4
FAN05G5493 Fragaria x ananassa HOM05D003060 ORTHO05D001716 9.7e-08 63.5 96 34.4
FAN09G4310 Fragaria x ananassa HOM05D003060 ORTHO05D001716 9.7e-08 63.5 96 34.4
FAN14G2973 Fragaria x ananassa HOM05D003060 ORTHO05D001716 9.7e-08 63.5 96 34.4
Aa31LG11G9390 Aethionema arabicum HOM05D003060 ORTHO05D001716 1.3e-07 63.2 94 31.9
CAN.G820.4 Capsicum annuum HOM05D003060 ORTHO05D001716 1.3e-07 63.2 92 32.6
Cc00_g10560 Coffea canephora HOM05D003060 ORTHO05D001716 1.3e-07 63.2 92 31.5
Solyc01g067040.2 Solanum lycopersicum HOM05D003060 ORTHO05D001716 1.3e-07 63.2 118 27.1
Actinidia19785 Actinidia chinensis HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 30.0
MSTRG.27986 Avicennia marina HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 32.2
Lalb_Chr18g0045701 Lupinus albus HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 33.3
Medtr7g113180 Medicago truncatula HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 32.2
Oeu012112.1 Olea europaea HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 31.1
PSO063G5713 Papaver somniferum HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 33.3
PSO782G3873 Papaver somniferum HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 33.3
Solyc01g099360.3 Solanum lycopersicum HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 31.1
Sopen01g042920 Solanum pennellii HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 31.1
PGSC0003DMG401024702 Solanum tuberosum HOM05D003060 ORTHO05D001716 1.7e-07 62.8 90 31.1
Thhalv10019994m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 2.2e-07 62.4 90 34.4
Sopen01g028750 Solanum pennellii HOM05D003060 ORTHO05D001716 2.2e-07 62.4 118 28.8
unitig_749.g13558 Utricularia gibba HOM05D003060 ORTHO05D001716 2.2e-07 62.4 90 32.2
unitig_899.g15592 Utricularia gibba HOM05D003060 ORTHO05D001716 2.2e-07 62.4 90 32.2
Zm00001eb354250 Zea mays HOM05D003060 ORTHO05D001716 2.2e-07 62.4 92 33.7
Actinidia24646 Actinidia chinensis HOM05D003060 ORTHO05D001716 2.8e-07 62.0 90 30.0
Haze_01221 Corylus avellana HOM05D003060 ORTHO05D001716 2.8e-07 62.0 90 35.6
HanXRQChr09g0274471 Helianthus annuus HOM05D000555 ORTHO05D000646 2.8e-07 62.0 84 41.7
Lsat_1_v5_gn_9_87441 Lactuca sativa HOM05D003060 ORTHO05D001716 2.8e-07 62.0 90 31.1
Rhsim07G0186300 Rhododendron simsii HOM05D003060 ORTHO05D001716 2.8e-07 62.0 90 33.3
PGSC0003DMG400022663 Solanum tuberosum HOM05D003060 ORTHO05D001716 2.8e-07 62.0 95 30.5
SGA_v2.0_scaffold98G29313 Striga asiatica HOM05D003060 ORTHO05D001716 2.8e-07 62.0 90 31.1
GSVIVG01031118001 Vitis vinifera HOM05D003060 ORTHO05D001716 2.8e-07 62.0 91 31.9
Os05g0149200 Oryza sativa ssp. japonica HOM05D003060 ORTHO05D001716 3.7e-07 61.6 107 31.8
Os05g0463400 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D001716 3.7e-07 61.6 94 35.1
SalBow7G2475 Salvia bowleyana HOM05D003060 ORTHO05D001716 3.7e-07 61.6 90 33.3
CSS0034622 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 4.8e-07 61.2 90 31.1
Migut.N01988 Erythranthe guttata HOM05D003060 ORTHO05D001716 4.8e-07 61.2 90 31.1
Lj1g0012568 Lotus japonicus HOM05D003060 ORTHO05D001716 4.8e-07 61.2 90 32.2
MCO15G409 Micromonas commoda HOM05D001232 ORTHO05D000646 4.8e-07 61.2 80 33.8
SGA_v2.0_scaffold80G25802 Striga asiatica HOM05D003060 ORTHO05D001716 4.8e-07 61.2 90 31.1
Aqoxy2G03022 Aquilegia oxysepala HOM05D003060 ORTHO05D001716 6.3e-07 60.8 90 32.2
Carub.0003s0471 Capsella rubella HOM05D003060 ORTHO05D001716 8.2e-07 60.5 90 30.0
ECA132G0003 Erigeron canadensis HOM05D003060 ORTHO05D001716 8.2e-07 60.5 90 31.1
MD12G1216400 Malus domestica HOM05D003060 ORTHO05D001716 8.2e-07 60.5 90 33.3
Nitab4.5_0002344g0090 Nicotiana tabacum HOM05D003060 ORTHO05D001716 8.2e-07 60.5 90 30.0
Psat0s545g0040 Pisum sativum HOM05D003060 ORTHO05D001716 8.2e-07 60.5 90 31.1
VMungo0540G0889 Vigna mungo HOM05D003060 ORTHO05D001716 8.2e-07 60.5 90 32.2
AL3G15990 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 1.1e-06 60.1 90 32.2
arahy.Tifrunner.gnm1.ann1.LGT5H6 Arachis hypogaea HOM05D003060 ORTHO05D001716 1.1e-06 60.1 90 31.1
arahy.Tifrunner.gnm1.ann1.U2HTAJ Arachis hypogaea HOM05D003060 ORTHO05D001716 1.1e-06 60.1 90 31.1
Haze_04161 Corylus avellana HOM05D003060 ORTHO05D001716 1.1e-06 60.1 90 33.3
Thhalv10003560m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 1.1e-06 60.1 90 31.1
MBI19_g13125_MAGBIO Magnolia biondii HOM05D003060 ORTHO05D001716 1.1e-06 60.1 90 31.1
unitig_746.g26861 Utricularia gibba HOM05D003060 ORTHO05D001716 1.1e-06 60.1 91 31.9
Actinidia19783 Actinidia chinensis HOM05D003060 ORTHO05D001716 1.4e-06 59.7 90 28.9
AT5G02950 Arabidopsis thaliana HOM05D000855 ORTHO05D002321 1.4e-06 59.7 93 32.3
ClCG02G015530 Citrullus lanatus HOM05D003060 ORTHO05D001716 1.4e-06 59.7 91 33.0
MELO3C004230.2 Cucumis melo HOM05D003060 ORTHO05D001716 1.4e-06 59.7 91 33.0
CsaV3_2G006550 Cucumis sativus L. HOM05D003060 ORTHO05D001716 1.4e-06 59.7 91 33.0
Nitab4.5_0004754g0020 Nicotiana tabacum HOM05D003060 ORTHO05D001716 1.4e-06 59.7 90 30.0
Phvul.006G090511 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 1.4e-06 59.7 90 31.1
Thecc.08G198500 Theobroma cacao HOM05D003060 ORTHO05D001716 1.4e-06 59.7 90 31.1
TWI12G1080 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 1.4e-06 59.7 90 30.0
VMungo0540G1887 Vigna mungo HOM05D003060 ORTHO05D001716 1.4e-06 59.7 90 30.0
AT3G05430 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 31.1
Ca_05807_v3 Cicer arietinum L. HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 31.1
COL.COLO4_05531 Corchorus olitorius HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 31.1
Dinv40309 Davidia involucrata HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 32.2
Glyma.19G234300 Glycine max HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 31.1
Nn3g21411 Nelumbo nucifera HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 32.2
Phvul.006G090600 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 1.8e-06 59.3 90 31.1
TAR362G0619 Trochodendron aralioides HOM05D003060 ORTHO05D001716 1.8e-06 59.3 94 31.9
Actinidia40264 Actinidia chinensis HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 31.1
Aa31LG5G15950 Aethionema arabicum HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 33.3
CSS0035849 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 28.9
CARHR186170 Cardamine hirsuta HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 31.1
Cfa006614 Carpinus fangiana HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 32.2
CiPaw.08G163000 Carya illinoinensis HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 32.2
TPR.G33216 Trifolium pratense HOM05D003060 ORTHO05D001716 2.4e-06 58.9 90 31.1
CANSAT54G0820 Cannabis sativa HOM05D003060 ORTHO05D001716 3.1e-06 58.5 94 31.9
DCAR_022153 Daucus carota HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 33.3
Duzib116G0105 Durio zibethinus HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 31.1
Duzib177G0733 Durio zibethinus HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 31.1
Duzib211G0658 Durio zibethinus HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 31.1
Lsat_1_v5_gn_4_87100 Lactuca sativa HOM05D000555 ORTHO05D000646 3.1e-06 58.5 76 39.5
Lj5g0001145 Lotus japonicus HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 32.2
SalBow3G3371 Salvia bowleyana HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 30.0
SEGI_40933 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 3.1e-06 58.5 94 27.7
THA.LOC104802799 Tarenaya hassleriana HOM05D003060 ORTHO05D001716 3.1e-06 58.5 90 31.1
vmacro08136 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 3.1e-06 58.5 98 29.6
CDE02G1047 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 4.1e-06 58.2 98 29.6
Nitab4.5_0003749g0010 Nicotiana tabacum HOM05D003060 ORTHO05D001716 4.1e-06 58.2 102 28.4
Sed0010373 Sechium edule HOM05D003060 ORTHO05D001716 4.1e-06 58.2 90 32.2
TWI56G0319 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 4.1e-06 58.2 90 30.0
CDE08G1209 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 5.3e-06 57.8 94 29.8
COL.COLO4_13891 Corchorus olitorius HOM05D003060 ORTHO05D001716 5.3e-06 57.8 90 32.2
DCAR_001941 Daucus carota HOM05D003060 ORTHO05D001716 5.3e-06 57.8 90 32.2
TWI36G0905 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 5.3e-06 57.8 90 30.0
AL6G39380 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 7.0e-06 57.4 90 30.0
Carub.0006s2494 Capsella rubella HOM05D003060 ORTHO05D001716 7.0e-06 57.4 90 30.0
Manes.09G169200 Manihot esculenta HOM05D003060 ORTHO05D001716 7.0e-06 57.4 90 31.1
Sc16g0008550 Simmondsia chinensis HOM05D003060 ORTHO05D001716 7.0e-06 57.4 113 27.4
Cc00_g10500 Coffea canephora HOM05D003060 ORTHO05D001716 9.1e-06 57.0 90 28.9
Glyma.10G152700 Glycine max HOM05D003060 ORTHO05D001716 9.1e-06 57.0 90 30.0
Glyma.20G235700 Glycine max HOM05D003060 ORTHO05D001716 9.1e-06 57.0 90 30.0
Peaxi162Scf00534g00111 Petunia axillaris HOM05D003060 ORTHO05D001716 9.1e-06 57.0 90 30.0
Prupe.6G322700 Prunus persica HOM05D003060 ORTHO05D001716 9.1e-06 57.0 90 31.1
SHI18114 Sapria himalayana HOM05D003060 ORTHO05D001716 9.1e-06 57.0 92 30.4
TWI12G0146 Tripterygium wilfordii HOM05D000855 ORTHO05D001716 9.1e-06 57.0 111 27.9


User provided reference genes

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