Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G099 Micromonas commoda HOM05D001499 ORTHO05D001560 1.6e-45 185.7 90 100.0
Sed0024523 Sechium edule HOM05D001499 ORTHO05D001560 3.9e-23 111.3 85 55.3
DCAR_009067 Daucus carota HOM05D001499 ORTHO05D001560 8.6e-23 110.2 83 55.4
Dinv17969 Davidia involucrata HOM05D001499 ORTHO05D001560 1.9e-22 109.0 83 54.2
GSVIVG01033256001 Vitis vinifera HOM05D001499 ORTHO05D001560 1.9e-22 109.0 83 54.2
DCAR_020497 Daucus carota HOM05D001499 ORTHO05D001560 2.5e-22 108.6 83 55.4
Thhalv10016520m.g Eutrema salsugineum HOM05D001499 ORTHO05D001560 2.5e-22 108.6 83 55.4
Eucgr.A02337 Eucalyptus grandis HOM05D001499 ORTHO05D001560 3.3e-22 108.2 81 54.3
CARHR136760 Cardamine hirsuta HOM05D001499 ORTHO05D001560 4.3e-22 107.8 83 54.2
Cpa.g.sc967.2 Carica papaya HOM05D001499 ORTHO05D001560 4.3e-22 107.8 83 51.8
Cfa016805 Carpinus fangiana HOM05D001499 ORTHO05D001560 4.3e-22 107.8 82 53.7
Lju124C43T7 Lonicera japonica HOM05D001499 ORTHO05D001560 4.3e-22 107.8 83 53.0
Prupe.7G056500 Prunus persica HOM05D001499 ORTHO05D001560 4.3e-22 107.8 83 54.2
CSS0027906 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 51.8
CANSAT80G2713 Cannabis sativa HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 51.8
Carub.0004s2395 Capsella rubella HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 54.2
FvH4_6g24270 Fragaria vesca HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 53.0
FAN02G2115 Fragaria x ananassa HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 53.0
FAN05G4798 Fragaria x ananassa HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 53.0
FAN09G3104 Fragaria x ananassa HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 53.0
SGA_v2.0_scaffold94G28488 Striga asiatica HOM05D001499 ORTHO05D001560 5.6e-22 107.5 83 54.2
MD00G1191800 Malus domestica HOM05D001499 ORTHO05D001560 7.3e-22 107.1 81 55.6
Medtr1g053160 Medicago truncatula HOM05D001499 ORTHO05D001560 7.3e-22 107.1 83 51.8
Rhsim03G0027400 Rhododendron simsii HOM05D001499 ORTHO05D001560 7.3e-22 107.1 83 53.0
SalBow6G6755 Salvia bowleyana HOM05D001499 ORTHO05D001560 7.3e-22 107.1 83 51.8
Thecc.05G149400 Theobroma cacao HOM05D001499 ORTHO05D001560 7.3e-22 107.1 82 53.7
TAR633G1315 Trochodendron aralioides HOM05D001499 ORTHO05D001560 7.3e-22 107.1 83 51.8
AL4G39980 Arabidopsis lyrata HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 54.2
AT2G41680 Arabidopsis thaliana HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 54.2
A03p23360 Brassica napus HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 54.2
BraA03t11553Z Brassica rapa HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 54.2
Nn7g36317 Nelumbo nucifera HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 51.8
Sp4g23920 Schrenkiella parvula HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 54.2
SGA_v2.0_scaffold273G46435 Striga asiatica HOM05D001499 ORTHO05D001560 9.5e-22 106.7 83 50.6
Actinidia22801 Actinidia chinensis HOM05D001499 ORTHO05D001560 1.2e-21 106.3 81 51.9
A05p02410 Brassica napus HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 53.0
C04p02860 Brassica napus HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 53.0
BolC4t21926H Brassica oleracea HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 53.0
CiPaw.09G039100 Carya illinoinensis HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 50.6
ClCG04G003420 Citrullus lanatus HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 54.2
MELO3C023105.2 Cucumis melo HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 54.2
RcHm_v2.0_Chr3g0482921 Rosa chinensis HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 51.8
vmacro07834 Vaccinium macrocarpon HOM05D001499 ORTHO05D001560 1.2e-21 106.3 83 51.8
Aa31LG1G23700 Aethionema arabicum HOM05D001499 ORTHO05D001560 1.6e-21 105.9 83 51.8
CiPaw.10G034300 Carya illinoinensis HOM05D001499 ORTHO05D001560 1.6e-21 105.9 81 54.3
Manes.08G051700 Manihot esculenta HOM05D001499 ORTHO05D001560 1.6e-21 105.9 83 50.6
Manes.09G020100 Manihot esculenta HOM05D001499 ORTHO05D001560 1.6e-21 105.9 83 50.6
unitig_26.g9049 Utricularia gibba HOM05D001499 ORTHO05D001560 1.6e-21 105.9 83 53.0
CDE09G1433 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 2.1e-21 105.5 83 51.8
Glyma.10G113100 Glycine max HOM05D001499 ORTHO05D001560 2.1e-21 105.5 83 50.6
Lalb_Chr25g0287171 Lupinus albus HOM05D001499 ORTHO05D001560 2.1e-21 105.5 83 51.8
TAR636G3397 Trochodendron aralioides HOM05D001499 ORTHO05D001560 2.1e-21 105.5 83 51.8
Ah.04g151570 Amaranthus hybridus HOM05D001499 ORTHO05D001560 2.8e-21 105.1 81 55.6
ATR0320G039 Amborella trichopoda HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 49.4
Aqoxy2G00225 Aquilegia oxysepala HOM05D001499 ORTHO05D001560 2.8e-21 105.1 82 52.4
CSS0008595 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 51.8
Ciclev10004686m.g Citrus clementina HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 50.6
Duzib106G0340 Durio zibethinus HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 50.6
Gohir.D03G069600 Gossypium hirsutum HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 49.4
Gorai.003G091100 Gossypium raimondii HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 49.4
Potri.006G049100 Populus trichocarpa HOM05D001499 ORTHO05D001560 2.8e-21 105.1 82 51.2
TPR.G29104 Trifolium pratense HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 50.6
TWI77G0056 Tripterygium wilfordii HOM05D001499 ORTHO05D001560 2.8e-21 105.1 81 51.9
VMungo0720G2024 Vigna mungo HOM05D001499 ORTHO05D001560 2.8e-21 105.1 83 49.4
BcaC01g05324 Brassica carinata HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 53.0
C03p27880 Brassica napus HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 53.0
BolC3t15159H Brassica oleracea HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 53.0
CsaV3_4G011840 Cucumis sativus L. HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 54.2
HanXRQChr13g0396471 Helianthus annuus HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 53.0
Lj5g0024774 Lotus japonicus HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 51.8
Nitab4.5_0000364g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 50.6
Nitab4.5_0003307g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 3.6e-21 104.8 83 50.6
Lalb_Chr20g0110561 Lupinus albus HOM05D001499 ORTHO05D001560 4.7e-21 104.4 83 50.6
PSO339G1573 Papaver somniferum HOM05D001499 ORTHO05D001560 4.7e-21 104.4 83 51.8
PSO384G4106 Papaver somniferum HOM05D001499 ORTHO05D001560 4.7e-21 104.4 83 51.8
CSS0040554 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 6.2e-21 104.0 83 50.6
ECA236G5056 Erigeron canadensis HOM05D001499 ORTHO05D001560 6.2e-21 104.0 81 51.9
Phvul.007G251800 Phaseolus vulgaris HOM05D001499 ORTHO05D001560 6.2e-21 104.0 83 49.4
HPP92_025058 Vanilla planifolia HOM05D001499 ORTHO05D001560 6.2e-21 104.0 83 51.8
Lsat_1_v5_gn_5_161241 Lactuca sativa HOM05D001499 ORTHO05D001560 8.1e-21 103.6 83 51.8
Oeu008164.1 Olea europaea HOM05D001499 ORTHO05D001560 8.1e-21 103.6 81 50.6
Sabra06G0034400 Salix brachista HOM05D001499 ORTHO05D001560 8.1e-21 103.6 81 51.9
Actinidia39215 Actinidia chinensis HOM05D001499 ORTHO05D001560 1.1e-20 103.2 83 48.2
Ca_10365_v3 Cicer arietinum L. HOM05D001499 ORTHO05D001560 1.1e-20 103.2 83 48.2
COL.COLO4_04401 Corchorus olitorius HOM05D001499 ORTHO05D001560 1.1e-20 103.2 83 49.4
ECA248G2226 Erigeron canadensis HOM05D001499 ORTHO05D001560 1.1e-20 103.2 83 51.8
THA.LOC104824434 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 1.4e-20 102.8 81 49.4
Atru.chr1.1126 Acer truncatum HOM05D001499 ORTHO05D001560 1.8e-20 102.4 82 50.0
arahy.Tifrunner.gnm1.ann1.K81J42 Arachis hypogaea HOM05D001499 ORTHO05D001560 1.8e-20 102.4 83 47.0
Hma1.2p1_1280F.1_g272530 Hydrangea macrophylla HOM05D001499 ORTHO05D001560 1.8e-20 102.4 83 50.6
Peaxi162Scf00130g00417 Petunia axillaris HOM05D001499 ORTHO05D001560 1.8e-20 102.4 81 49.4
Pp3c23_21190 Physcomitrium patens HOM05D001499 ORTHO05D001560 1.8e-20 102.4 83 53.0
Sed0013588 Sechium edule HOM05D001499 ORTHO05D001560 1.8e-20 102.4 83 51.8
Zm00001eb329630 Zea mays HOM05D001499 ORTHO05D001560 1.8e-20 102.4 83 49.4
Migut.J01745 Erythranthe guttata HOM05D001499 ORTHO05D001560 2.4e-20 102.1 83 49.4
Lsat_1_v5_gn_8_81141 Lactuca sativa HOM05D001499 ORTHO05D001560 2.4e-20 102.1 83 50.6
PGR004G0169 Punica granatum HOM05D001499 ORTHO05D001560 2.4e-20 102.1 81 49.4
Sopen04g008040 Solanum pennellii HOM05D001499 ORTHO05D001560 2.4e-20 102.1 81 51.9
PGSC0003DMG402027256 Solanum tuberosum HOM05D001499 ORTHO05D001560 2.4e-20 102.1 81 53.1
THA.LOC104802064 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 2.4e-20 102.1 81 50.6
AagrBONN_evm.TU.Sc2ySwM_344.1124 Anthoceros agrestis HOM05D001499 ORTHO05D001560 3.1e-20 101.7 83 51.8
BraA05t19235Z Brassica rapa HOM05D001499 ORTHO05D001560 3.1e-20 101.7 84 52.4
CAN.G128.7 Capsicum annuum HOM05D001499 ORTHO05D001560 3.1e-20 101.7 83 49.4
AUR62026055 Chenopodium quinoa HOM05D001499 ORTHO05D001560 3.1e-20 101.7 81 53.1
Hund19144 Selenicereus undatus HOM05D001499 ORTHO05D001560 4.0e-20 101.3 83 49.4
Mapoly0129s0051 Marchantia polymorpha HOM05D001499 ORTHO05D001560 5.2e-20 100.9 81 51.9
Solyc10g080080.3 Solanum lycopersicum HOM05D001499 ORTHO05D001560 5.2e-20 100.9 83 49.4
Sopen10g030690 Solanum pennellii HOM05D001499 ORTHO05D001560 5.2e-20 100.9 83 49.4
Cre01.g054150 Chlamydomonas reinhardtii HOM05D001499 ORTHO05D001560 6.8e-20 100.5 87 51.7
Dinv39621 Davidia involucrata HOM05D001499 ORTHO05D001560 6.8e-20 100.5 81 49.4
Pp3c20_5530 Physcomitrium patens HOM05D001499 ORTHO05D001560 6.8e-20 100.5 81 53.1
AUR62024464 Chenopodium quinoa HOM05D001499 ORTHO05D001560 8.9e-20 100.1 79 54.4
Cc06_g17670 Coffea canephora HOM05D001499 ORTHO05D001560 1.2e-19 99.8 81 50.6
Peaxi162Scf00109g00516 Petunia axillaris HOM05D001499 ORTHO05D001560 1.2e-19 99.8 79 51.9
SMO365G0084 Selaginella moellendorffii HOM05D001499 ORTHO05D001560 3.4e-19 98.2 83 49.4
PGSC0003DMG400023691 Solanum tuberosum HOM05D001499 ORTHO05D001560 4.4e-19 97.8 83 48.2
PRCOL_00001290 Prasinoderma coloniale HOM05D001499 ORTHO05D001560 1.7e-18 95.9 87 47.1
arahy.Tifrunner.gnm1.ann1.GI5ZH0 Arachis hypogaea HOM05D001499 ORTHO05D001560 3.8e-18 94.7 92 42.4
FAN14G3970 Fragaria x ananassa HOM05D001499 ORTHO05D001560 6.4e-18 94.0 107 41.1
MD12G1076800 Malus domestica HOM05D001499 ORTHO05D001560 3.2e-17 91.7 81 49.4
BcaC02g12788 Brassica carinata HOM05D001499 ORTHO05D001560 3.5e-16 88.2 83 48.2
Glyma.02G185300 Glycine max HOM05D001499 ORTHO05D001560 4.6e-16 87.8 83 47.0
Duzib093G1808 Durio zibethinus HOM05D001499 ORTHO05D001560 6.0e-16 87.4 65 52.3
Migut.K00092 Erythranthe guttata HOM05D001499 ORTHO05D001560 7.8e-16 87.0 65 49.2
Gohir.A02G107400 Gossypium hirsutum HOM05D001499 ORTHO05D001560 1.7e-15 85.9 65 49.2
EL10Ac3g07103 Beta vulgaris HOM05D001499 ORTHO05D001560 2.3e-15 85.5 68 50.0
Psat6g120920 Pisum sativum HOM05D001499 ORTHO05D001560 3.3e-14 81.6 63 54.0
CSS0022924 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 5.6e-14 80.9 62 51.6
Haze_19836 Corylus avellana HOM05D001499 ORTHO05D001560 2.1e-13 79.0 61 52.5
Actinidia09316 Actinidia chinensis HOM05D001499 ORTHO05D001560 6.9e-12 73.9 62 46.8
SalBow6G2288 Salvia bowleyana HOM05D001499 ORTHO05D001560 2.6e-11 72.0 83 41.0
QL07p001014 Quercus lobata HOM05D001499 ORTHO05D030935 1.6e-08 62.8 52 50.0
QL07p001252 Quercus lobata HOM05D001499 ORTHO05D001560 3.0e-07 58.5 94 31.9
BraA04t16948Z Brassica rapa HOM05D000803 ORTHO05D011944 1.1e-06 56.6 82 30.5
BcaB06g27413 Brassica carinata HOM05D000803 ORTHO05D011944 1.5e-06 56.2 73 28.8
A04p12840 Brassica napus HOM05D000803 ORTHO05D011944 2.5e-06 55.5 82 30.5
Cre09.g391900 Chlamydomonas reinhardtii HOM05D000247 ORTHO05D000288 2.5e-06 55.5 61 36.1
Nn1g04823 Nelumbo nucifera HOM05D000803 ORTHO05D001162 2.5e-06 55.5 85 30.6
CBR_g49840 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-06 55.1 43 53.5
GSVIVG01020089001 Vitis vinifera HOM05D000247 ORTHO05D000288 4.3e-06 54.7 72 37.5
CSS0000459 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 5.6e-06 54.3 85 37.6
CSS0034668 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 5.6e-06 54.3 85 37.6
Oeu037175.1 Olea europaea HOM05D000247 ORTHO05D000288 9.6e-06 53.5 86 36.0


User provided reference genes

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