Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.4e-76 289.7 158 100.0
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 3.4e-22 109.0 116 52.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 7.3e-17 91.3 107 52.3
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.3e-15 86.3 105 48.6
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.8e-15 84.7 144 41.0
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 8.9e-15 84.3 126 44.4
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 1.5e-14 83.6 143 42.0
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 2.0e-14 83.2 126 44.4
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.0e-14 83.2 144 41.0
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 2.0e-14 83.2 128 46.9
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 4.4e-14 82.0 148 42.6
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 5.8e-14 81.6 144 43.1
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 5.8e-14 81.6 135 42.2
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 5.8e-14 81.6 135 42.2
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 5.8e-14 81.6 106 48.1
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 9.8e-14 80.9 83 53.0
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.7e-13 80.1 99 50.5
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.7e-13 80.1 104 48.1
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 2.9e-13 79.3 127 44.1
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 2.9e-13 79.3 127 43.3
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.9e-13 79.3 139 41.7
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 2.9e-13 79.3 140 42.1
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.9e-13 79.3 144 42.4
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.9e-13 79.3 83 51.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.9e-13 79.3 103 47.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.7e-13 79.0 145 41.4
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 3.7e-13 79.0 103 47.6
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 4.9e-13 78.6 127 43.3
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 4.9e-13 78.6 138 40.6
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 4.9e-13 78.6 139 43.2
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 4.9e-13 78.6 144 41.7
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 6.4e-13 78.2 144 40.3
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 6.4e-13 78.2 144 40.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 6.4e-13 78.2 106 46.2
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 8.3e-13 77.8 106 46.2
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 8.3e-13 77.8 106 46.2
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 8.3e-13 77.8 106 46.2
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 8.3e-13 77.8 99 47.5
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 8.3e-13 77.8 136 43.4
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.1e-12 77.4 139 42.4
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.4e-12 77.0 126 44.4
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.4e-12 77.0 105 46.7
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.4e-12 77.0 146 40.4
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.4e-12 77.0 106 45.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.4e-12 77.0 143 40.6
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.4e-12 77.0 103 45.6
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.4e-12 77.0 103 45.6
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.4e-12 77.0 103 45.6
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 1.4e-12 77.0 103 45.6
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.4e-12 77.0 137 44.5
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.4e-12 77.0 83 50.6
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.4e-12 77.0 146 40.4
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-12 76.6 137 40.1
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-12 76.6 137 40.1
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-12 76.6 137 40.1
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.9e-12 76.6 141 41.8
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 2.4e-12 76.3 151 39.1
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 3.2e-12 75.9 94 46.8
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.2e-12 75.9 141 41.8
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 3.2e-12 75.9 106 47.2
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 3.2e-12 75.9 76 53.9
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 3.2e-12 75.9 142 41.5
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-12 75.5 137 41.6
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 4.1e-12 75.5 134 43.3
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 5.4e-12 75.1 132 42.4
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 5.4e-12 75.1 147 40.1
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 5.4e-12 75.1 83 48.2
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 5.4e-12 75.1 147 41.5
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 5.4e-12 75.1 137 40.1
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 5.4e-12 75.1 109 44.0
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 7.1e-12 74.7 149 41.6
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 7.1e-12 74.7 137 43.1
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 7.1e-12 74.7 152 40.8
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 7.1e-12 74.7 104 44.2
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 9.2e-12 74.3 138 40.6
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 9.2e-12 74.3 137 40.1
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.2e-11 73.9 143 37.8
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 1.2e-11 73.9 147 40.1
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.2e-11 73.9 139 41.0
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.6e-11 73.6 147 40.8
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.6e-11 73.6 107 43.0
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.6e-11 73.6 143 39.9
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.1e-11 73.2 132 43.2
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.1e-11 73.2 137 38.7
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 2.1e-11 73.2 138 42.0
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 2.1e-11 73.2 137 38.7
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.1e-11 73.2 142 40.1
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 2.7e-11 72.8 138 39.9
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 2.7e-11 72.8 143 37.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 2.7e-11 72.8 147 39.5
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 2.7e-11 72.8 137 40.9
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 2.7e-11 72.8 140 40.7
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 3.5e-11 72.4 138 39.9
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 3.5e-11 72.4 143 40.6
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 4.6e-11 72.0 142 37.3
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 4.6e-11 72.0 146 38.4
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.6e-11 72.0 131 41.2
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 6.0e-11 71.6 145 37.2
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 6.0e-11 71.6 138 39.9
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 7.8e-11 71.2 136 41.2
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 7.8e-11 71.2 144 37.5
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 7.8e-11 71.2 141 38.3
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 7.8e-11 71.2 97 45.4
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-10 70.9 136 39.0
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.0e-10 70.9 144 37.5
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.0e-10 70.9 146 39.0
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.0e-10 70.9 148 39.9
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.3e-10 70.5 139 39.6
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.7e-10 70.1 70 58.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 1.7e-10 70.1 140 40.7
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 1.7e-10 70.1 140 40.7
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.7e-10 70.1 142 40.1
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.3e-10 69.7 136 41.2
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.3e-10 69.7 149 39.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 3.0e-10 69.3 140 40.7
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.9e-10 68.9 140 38.6
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 8.6e-10 67.8 148 36.5
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.9e-09 66.6 104 42.3
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 3.3e-09 65.9 141 38.3
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.3e-09 65.9 95 44.2
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 4.3e-09 65.5 140 40.7
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 5.6e-09 65.1 133 39.8
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 9.5e-09 64.3 102 47.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 9.5e-09 64.3 96 43.8
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 2.8e-08 62.8 147 38.1
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 2.8e-08 62.8 96 47.9
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 3.1e-07 59.3 107 39.3
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 3.1e-07 59.3 107 39.3
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 4.0e-07 58.9 113 39.8
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 5.2e-07 58.5 126 38.1
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-06 57.4 68 50.0
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 3.4e-06 55.8 66 50.0
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 9.9e-06 54.3 68 47.1


User provided reference genes

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