Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 8.1e-274 946.4 467 100.0
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 2.1e-32 144.4 255 38.8
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.2e-27 128.6 149 47.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 4.6e-27 126.7 204 39.7
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 7.9e-27 125.9 154 44.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 7.9e-27 125.9 145 48.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 7.9e-27 125.9 133 48.9
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.3e-26 125.2 149 44.3
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.3e-26 125.2 133 47.4
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.3e-26 125.2 149 46.3
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.3e-26 125.2 149 46.3
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.3e-26 125.2 133 48.1
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.3e-26 124.4 169 42.0
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.3e-26 124.4 227 36.1
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.0e-26 124.0 149 46.3
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 3.9e-26 123.6 149 46.3
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 5.1e-26 123.2 132 47.0
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.1e-26 123.2 149 45.6
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 5.1e-26 123.2 170 42.4
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 6.7e-26 122.9 169 41.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 6.7e-26 122.9 153 42.5
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 6.7e-26 122.9 133 48.1
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.1e-25 122.1 133 46.6
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.1e-25 122.1 133 48.1
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.1e-25 122.1 132 47.7
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.1e-25 122.1 133 47.4
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.1e-25 122.1 171 42.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.1e-25 122.1 133 48.1
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.5e-25 121.7 133 46.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.5e-25 121.7 133 47.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.5e-25 121.7 133 48.9
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.5e-25 121.7 132 47.0
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.5e-25 121.7 133 48.1
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.9e-25 121.3 169 42.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.9e-25 121.3 130 47.7
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.9e-25 121.3 133 47.4
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.9e-25 121.3 149 45.0
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.9e-25 121.3 132 47.0
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 3.3e-25 120.6 149 45.0
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 3.3e-25 120.6 133 48.1
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 3.3e-25 120.6 132 46.2
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 5.7e-25 119.8 148 43.9
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 5.7e-25 119.8 132 47.0
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 9.6e-25 119.0 149 43.6
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 9.6e-25 119.0 149 43.6
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 9.6e-25 119.0 133 46.6
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 9.6e-25 119.0 132 46.2
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 9.6e-25 119.0 132 46.2
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.3e-24 118.6 133 45.9
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.3e-24 118.6 133 45.9
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.3e-24 118.6 133 45.9
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.3e-24 118.6 135 47.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.3e-24 118.6 133 45.1
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.3e-24 118.6 132 46.2
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.6e-24 118.2 149 43.6
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.6e-24 118.2 149 43.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.6e-24 118.2 145 44.1
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.6e-24 118.2 127 45.7
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.6e-24 118.2 160 41.2
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 2.1e-24 117.9 149 45.6
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.8e-24 117.5 151 42.4
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.8e-24 117.5 127 50.4
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 3.7e-24 117.1 149 44.3
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.7e-24 117.1 140 46.4
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 4.8e-24 116.7 132 45.5
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 4.8e-24 116.7 149 45.0
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 6.3e-24 116.3 149 43.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 6.3e-24 116.3 169 39.6
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 6.3e-24 116.3 149 43.0
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.3e-24 116.3 149 43.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.3e-24 116.3 149 43.0
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.2e-24 115.9 133 45.9
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.2e-24 115.9 133 45.9
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 8.2e-24 115.9 133 47.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 8.2e-24 115.9 125 48.8
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 8.2e-24 115.9 168 42.3
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 8.2e-24 115.9 149 44.3
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 8.2e-24 115.9 133 45.1
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.1e-23 115.5 149 43.0
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.1e-23 115.5 132 45.5
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.4e-23 115.2 170 41.2
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.8e-23 114.8 147 42.9
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.8e-23 114.8 132 44.7
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.8e-23 114.8 125 48.8
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.8e-23 114.8 147 42.2
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.8e-23 114.8 133 45.9
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.4e-23 114.4 124 46.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.4e-23 114.4 136 43.4
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 3.1e-23 114.0 177 39.0
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 3.1e-23 114.0 177 39.0
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 4.1e-23 113.6 126 45.2
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 5.3e-23 113.2 111 52.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 5.3e-23 113.2 149 44.3
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.9e-23 112.8 148 41.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.0e-23 112.5 95 55.8
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.2e-22 112.1 146 45.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.6e-22 110.9 95 54.7
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.4e-22 110.5 177 38.4
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.7e-21 108.2 170 39.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.1e-20 105.5 136 44.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.5e-20 104.4 151 36.4
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 3.2e-20 104.0 144 41.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.2e-19 102.1 130 43.8
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.6e-19 101.7 124 43.5
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 2.1e-19 101.3 132 43.9
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 2.7e-19 100.9 124 43.5
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.5e-19 100.5 124 43.5
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.9e-19 99.4 86 54.7
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.1e-18 96.7 151 37.1
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 8.7e-18 95.9 124 42.7
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.5e-17 94.4 119 42.9
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 2.5e-17 94.4 116 41.4
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.3e-17 93.6 109 47.7
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 9.7e-17 92.4 147 36.7
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 6.3e-16 89.7 123 40.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.4e-15 87.8 153 35.9
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.1e-15 87.4 101 48.5
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.1e-15 87.0 97 47.4
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 4.1e-15 87.0 125 42.4
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 5.9e-14 83.2 65 55.4
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.3e-13 82.0 101 46.5
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 2.7e-11 74.3 62 50.0
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.7e-11 74.3 46 63.0
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 4.3e-09 67.0 57 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 5.7e-09 66.6 74 43.2
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 7.4e-09 66.2 87 37.9
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-08 65.5 80 43.8
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.4e-07 61.2 91 41.8
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.4e-07 61.2 40 62.5
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 3.1e-07 60.8 91 40.7
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.3e-07 60.1 72 40.3
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.5e-06 58.5 78 42.3


User provided reference genes

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