Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 1.3e-54 216.9 110 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 1.2e-10 70.9 99 40.4
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 1.2e-10 70.9 97 44.3
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.5e-10 70.5 100 40.0
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 2.0e-10 70.1 100 45.0
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 3.4e-10 69.3 121 39.7
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 5.8e-10 68.6 100 40.0
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 5.8e-10 68.6 100 40.0
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 5.8e-10 68.6 89 41.6
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 7.6e-10 68.2 67 50.7
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 1.3e-09 67.4 67 50.7
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 1.7e-09 67.0 90 41.1
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 1.7e-09 67.0 92 40.2
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 1.7e-09 67.0 67 50.7
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.7e-09 67.0 108 38.9
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 1.7e-09 67.0 97 41.2
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 1.7e-09 67.0 73 46.6
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 2.2e-09 66.6 67 49.3
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 2.2e-09 66.6 67 49.3
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 2.2e-09 66.6 67 49.3
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 2.2e-09 66.6 67 49.3
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 2.9e-09 66.2 67 49.3
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 3.8e-09 65.9 67 49.3
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 3.8e-09 65.9 67 49.3
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 3.8e-09 65.9 67 49.3
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 3.8e-09 65.9 67 49.3
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 3.8e-09 65.9 67 49.3
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 3.8e-09 65.9 67 49.3
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 4.9e-09 65.5 69 50.7
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 4.9e-09 65.5 70 47.1
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 4.9e-09 65.5 67 49.3
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 4.9e-09 65.5 104 38.5
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 4.9e-09 65.5 67 49.3
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 4.9e-09 65.5 67 47.8
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 4.9e-09 65.5 84 42.9
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 6.4e-09 65.1 66 50.0
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 6.4e-09 65.1 119 34.5
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 6.4e-09 65.1 92 40.2
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 6.4e-09 65.1 67 49.3
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 6.4e-09 65.1 67 49.3
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 6.4e-09 65.1 67 49.3
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 8.4e-09 64.7 82 42.7
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 8.4e-09 64.7 67 47.8
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 8.4e-09 64.7 80 43.8
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 8.4e-09 64.7 67 47.8
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 8.4e-09 64.7 67 47.8
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 8.4e-09 64.7 67 47.8
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 8.4e-09 64.7 82 43.9
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 1.4e-08 63.9 122 37.7
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.4e-08 63.9 100 36.0
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 1.4e-08 63.9 67 47.8
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 1.4e-08 63.9 119 34.5
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 1.4e-08 63.9 63 50.8
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.4e-08 63.9 81 42.0
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 1.4e-08 63.9 67 47.8
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 1.9e-08 63.5 97 36.1
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.9e-08 63.5 82 42.7
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 46.3
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 47.8
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 47.8
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 47.8
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 47.8
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 46.3
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 46.3
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.9e-08 63.5 120 35.0
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 47.8
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 1.9e-08 63.5 67 47.8
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 2.4e-08 63.2 67 47.8
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 2.4e-08 63.2 67 47.8
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 2.4e-08 63.2 67 47.8
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 2.4e-08 63.2 67 47.8
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 2.4e-08 63.2 67 46.3
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.4e-08 63.2 67 47.8
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 3.2e-08 62.8 67 46.3
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 3.2e-08 62.8 67 47.8
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 3.2e-08 62.8 67 46.3
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 4.2e-08 62.4 67 46.3
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 4.2e-08 62.4 67 46.3
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 4.2e-08 62.4 67 46.3
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 4.2e-08 62.4 67 46.3
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 4.2e-08 62.4 51 56.9
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 4.2e-08 62.4 66 48.5
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 4.2e-08 62.4 67 47.8
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 4.2e-08 62.4 67 46.3
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 5.4e-08 62.0 67 46.3
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 5.4e-08 62.0 67 46.3
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 5.4e-08 62.0 65 49.2
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 7.1e-08 61.6 67 46.3
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 7.1e-08 61.6 64 50.0
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 7.1e-08 61.6 97 38.1
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 7.1e-08 61.6 67 46.3
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 9.3e-08 61.2 67 44.8
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 9.3e-08 61.2 90 38.9
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 9.3e-08 61.2 65 46.2
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 9.3e-08 61.2 67 44.8
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 9.3e-08 61.2 67 44.8
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 1.2e-07 60.8 66 45.5
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.2e-07 60.8 67 44.8
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 1.6e-07 60.5 66 47.0
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 2.1e-07 60.1 67 44.8
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 2.7e-07 59.7 67 44.8
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 4.6e-07 58.9 67 43.3
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 1.0e-06 57.8 89 39.3


User provided reference genes

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