Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 4.2e-65 251.1 120 100.0
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 6.1e-24 114.4 101 47.5
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.0e-23 113.6 114 48.2
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 6.7e-23 110.9 106 52.8
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 8.8e-23 110.5 114 48.2
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.0e-22 109.4 105 51.4
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.0e-22 109.4 101 53.5
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.3e-22 108.6 101 53.5
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 3.3e-22 108.6 105 52.4
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 4.4e-22 108.2 94 55.3
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 4.4e-22 108.2 106 51.9
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 4.4e-22 108.2 85 54.1
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 4.4e-22 108.2 107 48.6
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 4.4e-22 108.2 101 52.5
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 5.7e-22 107.8 106 50.9
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 5.7e-22 107.8 106 50.9
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 5.7e-22 107.8 110 45.5
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 5.7e-22 107.8 101 53.5
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 5.7e-22 107.8 105 51.4
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 7.5e-22 107.5 104 49.0
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 7.5e-22 107.5 105 51.4
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 9.7e-22 107.1 109 49.5
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 1.3e-21 106.7 109 49.5
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 1.3e-21 106.7 106 50.9
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 1.3e-21 106.7 97 52.6
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.3e-21 106.7 113 47.8
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 1.7e-21 106.3 106 50.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 1.7e-21 106.3 105 51.4
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 1.7e-21 106.3 106 50.9
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 1.7e-21 106.3 106 50.9
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 2.2e-21 105.9 105 50.5
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 2.2e-21 105.9 105 50.5
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.2e-21 105.9 105 49.5
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.2e-21 105.9 102 49.0
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.8e-21 105.5 105 49.5
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.8e-21 105.5 105 50.5
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.8e-21 105.5 105 49.5
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 2.8e-21 105.5 113 46.9
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 2.8e-21 105.5 106 48.1
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.8e-21 105.5 113 49.6
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.8e-21 105.5 113 49.6
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 2.8e-21 105.5 113 47.8
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 2.8e-21 105.5 113 46.9
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 2.8e-21 105.5 99 51.5
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 3.7e-21 105.1 105 49.5
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 3.7e-21 105.1 113 48.7
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 3.7e-21 105.1 105 50.5
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.7e-21 105.1 107 47.7
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 4.8e-21 104.8 120 45.0
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.8e-21 104.8 104 48.1
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 4.8e-21 104.8 101 51.5
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 4.8e-21 104.8 97 51.5
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 4.8e-21 104.8 97 51.5
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 4.8e-21 104.8 113 46.9
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 4.8e-21 104.8 119 47.9
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 4.8e-21 104.8 113 46.9
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 4.8e-21 104.8 104 49.0
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 6.3e-21 104.4 105 49.5
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 6.3e-21 104.4 97 51.5
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 6.3e-21 104.4 94 53.2
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 6.3e-21 104.4 105 50.5
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 6.3e-21 104.4 105 50.5
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 6.3e-21 104.4 94 53.2
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 6.3e-21 104.4 99 50.5
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 8.3e-21 104.0 113 47.8
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 8.3e-21 104.0 94 52.1
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 8.3e-21 104.0 104 48.1
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 8.3e-21 104.0 117 49.6
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 8.3e-21 104.0 93 50.5
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 8.3e-21 104.0 105 48.6
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 1.1e-20 103.6 113 46.9
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.1e-20 103.6 97 51.5
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 1.1e-20 103.6 105 49.5
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 1.1e-20 103.6 113 46.0
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 1.1e-20 103.6 113 46.9
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 51.1
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 1.8e-20 102.8 120 45.0
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 1.8e-20 102.8 109 47.7
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.8e-20 102.8 106 48.1
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 2.4e-20 102.4 94 52.1
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 2.4e-20 102.4 96 51.0
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.4e-20 102.4 105 48.6
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 3.1e-20 102.1 105 48.6
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 4.1e-20 101.7 105 49.5
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 4.1e-20 101.7 113 46.9
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 4.1e-20 101.7 88 53.4
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.1e-20 101.7 117 48.7
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 4.1e-20 101.7 97 49.5
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 4.1e-20 101.7 105 46.7
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 4.1e-20 101.7 105 46.7
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 4.1e-20 101.7 105 46.7
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 5.3e-20 101.3 101 48.5
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.3e-20 101.3 105 48.6
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.3e-20 101.3 121 43.0
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 5.3e-20 101.3 113 44.2
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 7.0e-20 100.9 105 48.6
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 7.0e-20 100.9 105 48.6
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 7.0e-20 100.9 105 47.6
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 7.0e-20 100.9 107 47.7
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 9.1e-20 100.5 105 45.7
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 9.1e-20 100.5 105 48.6
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 9.1e-20 100.5 94 51.1
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 9.1e-20 100.5 105 47.6
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 9.1e-20 100.5 105 47.6
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 9.1e-20 100.5 105 47.6
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 9.1e-20 100.5 105 45.7
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 9.1e-20 100.5 96 50.0
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.2e-19 100.1 105 47.6
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 1.6e-19 99.8 113 44.2
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 1.6e-19 99.8 95 48.4
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.6e-19 99.8 113 46.9
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 1.6e-19 99.8 94 51.1
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 2.0e-19 99.4 113 44.2
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 2.0e-19 99.4 107 45.8
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 2.0e-19 99.4 118 46.6
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 4.5e-19 98.2 105 48.6
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 5.9e-19 97.8 94 50.0
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 7.7e-19 97.4 105 45.7
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.7e-18 96.3 72 56.9
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.7e-18 96.3 88 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 3.8e-18 95.1 118 38.1
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 3.8e-18 95.1 88 51.1
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 3.8e-18 95.1 88 52.3
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 5.0e-18 94.7 88 50.0
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 8.5e-18 94.0 94 43.6
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 8.5e-18 94.0 74 52.7
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 1.1e-17 93.6 113 45.1
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.5e-17 93.2 99 46.5
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 1.9e-17 92.8 109 46.8
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 1.9e-17 92.8 120 40.8
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 2.5e-17 92.4 107 46.7
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.5e-17 92.4 111 43.2
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 3.2e-17 92.0 100 45.0
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 4.2e-17 91.7 114 46.5
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 4.2e-17 91.7 110 46.4
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.7e-16 89.0 76 50.0
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.0e-15 87.0 102 44.1
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.0e-15 85.5 81 49.4
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 2.2e-13 79.3 86 47.7
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 8.3e-13 77.4 101 42.6
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 5.4e-12 74.7 59 54.2
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 9.1e-12 73.9 71 50.7
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 2.0e-11 72.8 118 34.7
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.3e-10 69.3 78 44.9
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.0e-07 60.5 50 52.0
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 2.3e-07 59.3 35 65.7
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.0e-07 58.5 46 54.3


User provided reference genes

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